Index

A B C D E F G H I J L M N O P Q R S T U V W X Y
All Classes and Interfaces|All Packages|Constant Field Values

A

addCategory(String, ValidationCategorySeverities, Boolean, ValidationCategoryTypes, String) - Method in class com.lantanagroup.link.ValidationCategorizer

addDate(String, Date) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

addJsonList(String, List<?>) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

addJsonObject(String, Object) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

addResource(String, IBaseResource) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

Address - Class in com.lantanagroup.link.db.model.tenant

Address() - Constructor for class com.lantanagroup.link.db.model.tenant.Address

addRule(ValidationCategoryRule.Field, String) - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

addRule(ValidationCategoryRule.Field, String, boolean) - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

addRuleSet() - Method in class com.lantanagroup.link.validation.RuleBasedValidationCategory

addRuleSet(boolean) - Method in class com.lantanagroup.link.validation.RuleBasedValidationCategory

addRuleSet(boolean, List<ValidationCategoryRule>) - Method in class com.lantanagroup.link.validation.RuleBasedValidationCategory

addString(String, String) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

addUUID(String, UUID) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

AfterApplyConceptMaps - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterBundling - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterMeasureEval - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterMeasureResolution - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterPatientDataQuery - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterPatientDataStore - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterPatientOfInterestLookup - Enum constant in enum class com.lantanagroup.link.EventTypes

AfterPatientResourceQuery - Enum constant in enum class com.lantanagroup.link.EventTypes

afterPropertiesSet() - Method in class com.lantanagroup.link.api.ApiApplication

Triggered after SpringBoot has set the properties/config for the application.

aggregate() - Method in class com.lantanagroup.link.api.ReportGenerator

Aggregate - Class in com.lantanagroup.link.db.model

Aggregate() - Constructor for class com.lantanagroup.link.db.model.Aggregate

AggregateMapper - Class in com.lantanagroup.link.db.mappers

AggregateMapper() - Constructor for class com.lantanagroup.link.db.mappers.AggregateMapper

aggregatePatientReports(MeasureReport, Collection<MeasureReport>) - Method in class com.lantanagroup.link.GenericAggregator

AggregateRepository - Class in com.lantanagroup.link.db.repositories

AggregateRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.AggregateRepository

ApiApplication - Class in com.lantanagroup.link.api

Spring Boot application entry point for Link.

ApiApplication() - Constructor for class com.lantanagroup.link.api.ApiApplication

ApiConfig - Class in com.lantanagroup.link.config.api

ApiConfig() - Constructor for class com.lantanagroup.link.config.api.ApiConfig

ApiController - Class in com.lantanagroup.link.api.controller

ApiController() - Constructor for class com.lantanagroup.link.api.controller.ApiController

ApiInfoGroup - Class in com.lantanagroup.link.config.api

ApiInfoGroup() - Constructor for class com.lantanagroup.link.config.api.ApiInfoGroup

ApiInfoGroupSection - Class in com.lantanagroup.link.config.api

ApiInfoGroupSection() - Constructor for class com.lantanagroup.link.config.api.ApiInfoGroupSection

ApiInfoGroupSectionLink - Class in com.lantanagroup.link.config.api

ApiInfoGroupSectionLink() - Constructor for class com.lantanagroup.link.config.api.ApiInfoGroupSectionLink

apiInit() - Method in class com.lantanagroup.link.api.ApiApplication

Bean injection for the ApiInit class, which causes the ApiInit class to be executed during SpringBoot startup.

ApiInit - Class in com.lantanagroup.link.api

Automatically detected when the Spring Boot application starts up.

ApiInit() - Constructor for class com.lantanagroup.link.api.ApiInit

ApiSecurityConfig - Class in com.lantanagroup.link.api

Sets the security for the API component, requiring authentication for most methods using `PreAuthTokenHeaderFilter`

ApiSecurityConfig() - Constructor for class com.lantanagroup.link.api.ApiSecurityConfig

ApiVersionModel - Class in com.lantanagroup.link.model

ApiVersionModel() - Constructor for class com.lantanagroup.link.model.ApiVersionModel

ApiVersionModel(String) - Constructor for class com.lantanagroup.link.model.ApiVersionModel

ApplicablePeriodExtensionUrl - Static variable in class com.lantanagroup.link.Constants

ApplyConceptMaps - Class in com.lantanagroup.link

ApplyConceptMaps() - Constructor for class com.lantanagroup.link.ApplyConceptMaps

applyTransformation(ConceptMap, List<Coding>) - Method in class com.lantanagroup.link.ApplyConceptMaps

asBundle(List<PatientData>) - Static method in class com.lantanagroup.link.db.model.PatientData

audit(LinkCredentials, HttpServletRequest, TenantService, AuditTypes, String) - Method in class com.lantanagroup.link.db.SharedService

Audit - Class in com.lantanagroup.link.db.model

Audit() - Constructor for class com.lantanagroup.link.db.model.Audit

AuditTypes - Enum Class in com.lantanagroup.link.db.model

AzureAuth - Class in com.lantanagroup.link.db.model.tenant.auth

AzureAuth - Class in com.lantanagroup.link.query.auth

AzureAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

AzureAuth() - Constructor for class com.lantanagroup.link.query.auth.AzureAuth

AzureBlobStorageConfig - Class in com.lantanagroup.link.config.sender

AzureBlobStorageConfig() - Constructor for class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

AzureBlobStorageSenderFormats - Enum Class in com.lantanagroup.link

B

BaseController - Class in com.lantanagroup.link.api.controller

BaseController() - Constructor for class com.lantanagroup.link.api.controller.BaseController

BaseMapper<T> - Class in com.lantanagroup.link.db.mappers

BaseMapper() - Constructor for class com.lantanagroup.link.db.mappers.BaseMapper

BaseMapper.Parameters - Class in com.lantanagroup.link.db.mappers

BaseMapper.Row - Class in com.lantanagroup.link.db.mappers

BasicAuth - Class in com.lantanagroup.link.db.model.tenant.auth

BasicAuth - Class in com.lantanagroup.link.query.auth

BasicAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.BasicAuth

BasicAuth() - Constructor for class com.lantanagroup.link.query.auth.BasicAuth

BasicAuthAndApiKey - Class in com.lantanagroup.link.db.model.tenant.auth

BasicAuthAndApiKey() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

BasicAuthAndApiKeyHeader - Class in com.lantanagroup.link.query.auth

BasicAuthAndApiKeyHeader() - Constructor for class com.lantanagroup.link.query.auth.BasicAuthAndApiKeyHeader

BeforeBundling - Enum constant in enum class com.lantanagroup.link.EventTypes

BeforeMeasureEval - Enum constant in enum class com.lantanagroup.link.EventTypes

BeforeMeasureResolution - Enum constant in enum class com.lantanagroup.link.EventTypes

BeforePatientDataQuery - Enum constant in enum class com.lantanagroup.link.EventTypes

BeforePatientDataStore - Enum constant in enum class com.lantanagroup.link.EventTypes

BeforePatientOfInterestLookup - Enum constant in enum class com.lantanagroup.link.EventTypes

BEST_PRACTICE - Enum constant in enum class com.lantanagroup.link.model.ValidationCategoryTypes

BulkController - Class in com.lantanagroup.link.api.controller

BulkController() - Constructor for class com.lantanagroup.link.api.controller.BulkController

BulkManagerService - Class in com.lantanagroup.link.api.bulk

BulkManagerService(Tenant, ExecutorService, SharedService, ApplicationContext) - Constructor for class com.lantanagroup.link.api.bulk.BulkManagerService

BulkOutput - Class in com.lantanagroup.link.model

BulkOutput() - Constructor for class com.lantanagroup.link.model.BulkOutput

BulkQuery - Class in com.lantanagroup.link.query.uscore

BulkQuery() - Constructor for class com.lantanagroup.link.query.uscore.BulkQuery

BulkResponse - Class in com.lantanagroup.link.model

BulkResponse() - Constructor for class com.lantanagroup.link.model.BulkResponse

BulkStatus - Class in com.lantanagroup.link.db.model

BulkStatus() - Constructor for class com.lantanagroup.link.db.model.BulkStatus

BulkStatuses - Class in com.lantanagroup.link.db.model

BulkStatuses() - Constructor for class com.lantanagroup.link.db.model.BulkStatuses

BulkStatusFetchTask - Class in com.lantanagroup.link.api.bulk

BulkStatusFetchTask() - Constructor for class com.lantanagroup.link.api.bulk.BulkStatusFetchTask

BulkStatusMapper - Class in com.lantanagroup.link.db.mappers

BulkStatusMapper() - Constructor for class com.lantanagroup.link.db.mappers.BulkStatusMapper

BulkStatusRepository - Class in com.lantanagroup.link.db.repositories

BulkStatusRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.BulkStatusRepository

BulkStatusResult - Class in com.lantanagroup.link.db.model

BulkStatusResult() - Constructor for class com.lantanagroup.link.db.model.BulkStatusResult

BulkStatusResultMapper - Class in com.lantanagroup.link.db.mappers

BulkStatusResultMapper() - Constructor for class com.lantanagroup.link.db.mappers.BulkStatusResultMapper

BulkStatusResultRepository - Class in com.lantanagroup.link.db.repositories

BulkStatusResultRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.BulkStatusResultRepository

Bundling - Class in com.lantanagroup.link.db.model.tenant

Bundling() - Constructor for class com.lantanagroup.link.db.model.tenant.Bundling

BundlingFullUrlFormat - Static variable in class com.lantanagroup.link.Constants

C

CANCELLED - Static variable in class com.lantanagroup.link.db.model.BulkStatuses

categorize() - Method in class com.lantanagroup.link.ValidationCategorizer

category - Variable in class com.lantanagroup.link.time.Stopwatch

CATEGORY_EVALUATE - Static variable in class com.lantanagroup.link.Constants

CATEGORY_EVENT - Static variable in class com.lantanagroup.link.Constants

CATEGORY_QUERY - Static variable in class com.lantanagroup.link.Constants

CATEGORY_REPORT - Static variable in class com.lantanagroup.link.Constants

CATEGORY_SUBMISSION - Static variable in class com.lantanagroup.link.Constants

CATEGORY_TEST - Static variable in class com.lantanagroup.link.Constants

CATEGORY_VALIDATION - Static variable in class com.lantanagroup.link.Constants

CdcOrgIdSystem - Static variable in class com.lantanagroup.link.Constants

CensusProfileUrl - Static variable in class com.lantanagroup.link.Constants

CernerAuth - Class in com.lantanagroup.link.db.model.tenant.auth

CernerAuth - Class in com.lantanagroup.link.query.auth

CernerAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

CernerAuth() - Constructor for class com.lantanagroup.link.query.auth.CernerAuth

changeIds() - Method in class com.lantanagroup.link.ResourceIdChanger

Finds each resource within the Bundle that has an invalid ID, assigns a new ID to the resource that is based on a hash of the original ID.

changeIds(Bundle) - Static method in class com.lantanagroup.link.ResourceIdChanger

Creates a new instance of ResourceIdChanger and calls `changeIds()`.

check(String, byte[], String) - Static method in class com.lantanagroup.link.Hasher

close() - Method in class com.lantanagroup.link.time.Stopwatch

CODE - Enum constant in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

CodeSystemCleanup - Class in com.lantanagroup.link.events

Finds references to invalid code systems and replaces them with valid code systems

CodeSystemCleanup() - Constructor for class com.lantanagroup.link.events.CodeSystemCleanup

collect(Base, Class<T>) - Static method in class com.lantanagroup.link.FhirHelper

com.lantanagroup.link - package com.lantanagroup.link

com.lantanagroup.link.api - package com.lantanagroup.link.api

com.lantanagroup.link.api.auth - package com.lantanagroup.link.api.auth

com.lantanagroup.link.api.bulk - package com.lantanagroup.link.api.bulk

com.lantanagroup.link.api.controller - package com.lantanagroup.link.api.controller

com.lantanagroup.link.api.scheduling - package com.lantanagroup.link.api.scheduling

com.lantanagroup.link.auth - package com.lantanagroup.link.auth

com.lantanagroup.link.config - package com.lantanagroup.link.config

com.lantanagroup.link.config.api - package com.lantanagroup.link.config.api

com.lantanagroup.link.config.auth - package com.lantanagroup.link.config.auth

com.lantanagroup.link.config.query - package com.lantanagroup.link.config.query

com.lantanagroup.link.config.sender - package com.lantanagroup.link.config.sender

com.lantanagroup.link.db - package com.lantanagroup.link.db

com.lantanagroup.link.db.mappers - package com.lantanagroup.link.db.mappers

com.lantanagroup.link.db.model - package com.lantanagroup.link.db.model

com.lantanagroup.link.db.model.tenant - package com.lantanagroup.link.db.model.tenant

com.lantanagroup.link.db.model.tenant.auth - package com.lantanagroup.link.db.model.tenant.auth

com.lantanagroup.link.db.repositories - package com.lantanagroup.link.db.repositories

com.lantanagroup.link.events - package com.lantanagroup.link.events

com.lantanagroup.link.model - package com.lantanagroup.link.model

com.lantanagroup.link.query - package com.lantanagroup.link.query

com.lantanagroup.link.query.auth - package com.lantanagroup.link.query.auth

com.lantanagroup.link.query.uscore - package com.lantanagroup.link.query.uscore

com.lantanagroup.link.serialize - package com.lantanagroup.link.serialize

com.lantanagroup.link.spring - package com.lantanagroup.link.spring

com.lantanagroup.link.time - package com.lantanagroup.link.time

com.lantanagroup.link.validation - package com.lantanagroup.link.validation

COMPLETE - Static variable in class com.lantanagroup.link.db.model.BulkStatuses

concatenate(List<T>, List<T>) - Static method in class com.lantanagroup.link.Helper

ConceptMap - Class in com.lantanagroup.link.db.model

ConceptMap() - Constructor for class com.lantanagroup.link.db.model.ConceptMap

ConceptMapController - Class in com.lantanagroup.link.api.controller

ConceptMapController() - Constructor for class com.lantanagroup.link.api.controller.ConceptMapController

ConceptMapMapper - Class in com.lantanagroup.link.db.mappers

ConceptMapMapper() - Constructor for class com.lantanagroup.link.db.mappers.ConceptMapMapper

ConceptMappingExtension - Static variable in class com.lantanagroup.link.Constants

ConceptMapRepository - Class in com.lantanagroup.link.db.repositories

ConceptMapRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.ConceptMapRepository

config - Variable in class com.lantanagroup.link.api.controller.BaseController

configure(HttpSecurity) - Method in class com.lantanagroup.link.api.ApiSecurityConfig

Constants - Class in com.lantanagroup.link

Constants() - Constructor for class com.lantanagroup.link.Constants

ContainedResourceCleanup - Class in com.lantanagroup.link.events

Moves any contained resources from resources retrieved from the EHR to the top-lavel of patient data

ContainedResourceCleanup() - Constructor for class com.lantanagroup.link.events.ContainedResourceCleanup

context - Variable in class com.lantanagroup.link.EventService

context - Variable in class com.lantanagroup.link.PatientIdService

CopyLocationAliasToType - Class in com.lantanagroup.link.events

CopyLocationAliasToType() - Constructor for class com.lantanagroup.link.events.CopyLocationAliasToType

CopyLocationIdentifierToType - Class in com.lantanagroup.link.events

Populates the Location.type with the first value from Location.identifier

CopyLocationIdentifierToType() - Constructor for class com.lantanagroup.link.events.CopyLocationIdentifierToType

CorsConfig - Class in com.lantanagroup.link.config.api

CorsConfig() - Constructor for class com.lantanagroup.link.config.api.CorsConfig

count - Variable in class com.lantanagroup.link.db.model.MetricData

countUncategorized(String) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

countUncategorizedValidationResults(String) - Method in class com.lantanagroup.link.db.TenantService

create(Tenant) - Static method in class com.lantanagroup.link.db.TenantService

create(SharedService, String) - Static method in class com.lantanagroup.link.db.TenantService

create(ResultSet) - Static method in class com.lantanagroup.link.model.LogMessage

createBulkUsers(List<User>) - Method in class com.lantanagroup.link.api.controller.UserController

createCodeableConcept(String, String) - Static method in class com.lantanagroup.link.FhirHelper

createFromIdentifier(String) - Static method in class com.lantanagroup.link.db.model.PatientId

createFromReference(String) - Static method in class com.lantanagroup.link.db.model.PatientId

createGroupsFromMeasure(MeasureReport, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.GenericAggregator

createOrUpdateConceptMap(ConceptMap, String) - Method in class com.lantanagroup.link.api.controller.ConceptMapController

createOrUpdateMeasureDef(Bundle, String) - Method in class com.lantanagroup.link.api.controller.MeasureDefController

createOrUpdateMeasurePackage(MeasurePackage) - Method in class com.lantanagroup.link.api.controller.MeasurePackageController

createPropertySource(String, EncodedResource) - Method in class com.lantanagroup.link.config.YamlPropertySourceFactory

createResource(IBaseResource) - Method in class com.lantanagroup.link.FhirDataProvider

createTenant(Tenant) - Method in class com.lantanagroup.link.api.controller.TenantController

createUser(User) - Method in class com.lantanagroup.link.api.controller.UserController

CRITICAL - Enum constant in enum class com.lantanagroup.link.model.ValidationCategoryTypes

ctx - Variable in class com.lantanagroup.link.api.controller.BaseController

ctx - Variable in class com.lantanagroup.link.FhirDataProvider

CurrentMonth - Enum constant in enum class com.lantanagroup.link.ReportingPeriodMethods

CurrentWeek - Enum constant in enum class com.lantanagroup.link.ReportingPeriodMethods

CustomCsrfTokenRepository - Class in com.lantanagroup.link.api.auth

CustomCsrfTokenRepository() - Constructor for class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

D

DataAbsentReasonExtensionUrl - Static variable in class com.lantanagroup.link.Constants

DataAbsentReasonUnknownCode - Static variable in class com.lantanagroup.link.Constants

DataController - Class in com.lantanagroup.link.api.controller

DataController() - Constructor for class com.lantanagroup.link.api.controller.DataController

DataRetentionCheckTask - Class in com.lantanagroup.link.api.scheduling

DataRetentionCheckTask() - Constructor for class com.lantanagroup.link.api.scheduling.DataRetentionCheckTask

DataTrace - Class in com.lantanagroup.link.db.model

DataTrace() - Constructor for class com.lantanagroup.link.db.model.DataTrace

DataTraceMapper - Class in com.lantanagroup.link.db.mappers

DataTraceMapper() - Constructor for class com.lantanagroup.link.db.mappers.DataTraceMapper

DataTraceRepository - Class in com.lantanagroup.link.db.repositories

DataTraceRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.DataTraceRepository

deduplicate() - Method in class com.lantanagroup.link.db.model.PatientList

deleteAll() - Method in class com.lantanagroup.link.db.repositories.AggregateRepository

deleteAll() - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

deleteAll() - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

deleteAll() - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

deleteAll() - Method in class com.lantanagroup.link.db.repositories.ReportRepository

deleteAllPatientData() - Method in class com.lantanagroup.link.db.TenantService

deleteAllPatientData(String) - Method in class com.lantanagroup.link.api.controller.QAController

deleteById(String) - Method in class com.lantanagroup.link.db.repositories.ReportRepository

deleteById(UUID) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

deleteByLastUpdatedBefore(Date) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

deleteByPatientId(String) - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

deleteByReport(String) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

deleteByReportId(String) - Method in class com.lantanagroup.link.db.repositories.AggregateRepository

deleteByReportId(String) - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

deleteByReportId(String) - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

deleteByRetrievedBefore(Date) - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

deleteForReport(String) - Method in class com.lantanagroup.link.db.repositories.ValidationCategoryRepository

deleteMeasureDefinition(String) - Method in class com.lantanagroup.link.api.controller.MeasureDefController

deleteMeasureDefinition(String) - Method in class com.lantanagroup.link.db.SharedService

deleteMeasurePackage(String) - Method in class com.lantanagroup.link.api.controller.MeasurePackageController

deleteMeasurePackage(String) - Method in class com.lantanagroup.link.db.SharedService

deletePatientByIDAndListId(String, UUID, String) - Method in class com.lantanagroup.link.api.controller.QAController

deletePatientByListAndPatientId(String, UUID) - Method in class com.lantanagroup.link.db.TenantService

deletePatientDataRetrievedBefore(Date) - Method in class com.lantanagroup.link.db.TenantService

deletePatientListById(String, UUID) - Method in class com.lantanagroup.link.api.controller.QAController

deletePatientListById(UUID) - Method in class com.lantanagroup.link.db.TenantService

deletePatientListsLastUpdatedBefore(Date) - Method in class com.lantanagroup.link.db.TenantService

deleteReport(String) - Method in class com.lantanagroup.link.db.TenantService

deleteReport(String, String) - Method in class com.lantanagroup.link.api.controller.QAController

deleteTenant(String) - Method in class com.lantanagroup.link.api.controller.TenantController

deleteTenantConfig(String) - Method in class com.lantanagroup.link.db.SharedService

deleteUnreferenced() - Method in class com.lantanagroup.link.db.repositories.DataTraceRepository

deleteUnreferenced() - Method in class com.lantanagroup.link.db.repositories.QueryRepository

deleteUser(UUID) - Method in class com.lantanagroup.link.api.controller.UserController

deleteValidationCategoriesForReport(String) - Method in class com.lantanagroup.link.db.TenantService

deleteValidationResults(String) - Method in class com.lantanagroup.link.db.TenantService

deserialize(JsonParser, DeserializationContext) - Method in class com.lantanagroup.link.serialize.FhirJsonDeserializer

DETAILS_TEXT - Enum constant in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class com.lantanagroup.link.api.auth.PreAuthTokenHeaderFilter

doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class com.lantanagroup.link.spring.ErrorFilter

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.AggregateMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.BaseMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.BulkStatusMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.BulkStatusResultMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.ConceptMapMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.DataTraceMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.PatientDataMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.PatientListMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.PatientMeasureReportMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.QueryMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.ReportMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.ValidationResultCategoryMapper

doToModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.ValidationResultMapper

doToParameters(Aggregate) - Method in class com.lantanagroup.link.db.mappers.AggregateMapper

doToParameters(BulkStatus) - Method in class com.lantanagroup.link.db.mappers.BulkStatusMapper

doToParameters(BulkStatusResult) - Method in class com.lantanagroup.link.db.mappers.BulkStatusResultMapper

doToParameters(ConceptMap) - Method in class com.lantanagroup.link.db.mappers.ConceptMapMapper

doToParameters(DataTrace) - Method in class com.lantanagroup.link.db.mappers.DataTraceMapper

doToParameters(PatientData) - Method in class com.lantanagroup.link.db.mappers.PatientDataMapper

doToParameters(PatientList) - Method in class com.lantanagroup.link.db.mappers.PatientListMapper

doToParameters(PatientMeasureReport) - Method in class com.lantanagroup.link.db.mappers.PatientMeasureReportMapper

doToParameters(Query) - Method in class com.lantanagroup.link.db.mappers.QueryMapper

doToParameters(Report) - Method in class com.lantanagroup.link.db.mappers.ReportMapper

doToParameters(ValidationResult) - Method in class com.lantanagroup.link.db.mappers.ValidationResultMapper

doToParameters(ValidationResultCategory) - Method in class com.lantanagroup.link.db.mappers.ValidationResultCategoryMapper

doToParameters(T) - Method in class com.lantanagroup.link.db.mappers.BaseMapper

Draft - Enum constant in enum class com.lantanagroup.link.db.model.ReportStatuses

duration - Variable in class com.lantanagroup.link.db.model.MetricData

E

EhrPatientList - Class in com.lantanagroup.link.db.model.tenant

EhrPatientList() - Constructor for class com.lantanagroup.link.db.model.tenant.EhrPatientList

EncounterStatusTransformer - Class in com.lantanagroup.link.events

Changes the Encounter.status to "finished" if the Encounter has an end date

EncounterStatusTransformer() - Constructor for class com.lantanagroup.link.events.EncounterStatusTransformer

EpicAuth - Class in com.lantanagroup.link.db.model.tenant.auth

EpicAuth - Class in com.lantanagroup.link.query.auth

EpicAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

EpicAuth() - Constructor for class com.lantanagroup.link.query.auth.EpicAuth

equals(Object) - Method in class com.lantanagroup.link.db.model.PatientId

ERROR - Enum constant in enum class com.lantanagroup.link.model.ValidationCategorySeverities

ERROR_ID - Static variable in class com.lantanagroup.link.spring.ErrorFilter

ErrorController - Class in com.lantanagroup.link.spring

ErrorController() - Constructor for class com.lantanagroup.link.spring.ErrorController

ErrorFilter - Class in com.lantanagroup.link.spring

ErrorFilter() - Constructor for class com.lantanagroup.link.spring.ErrorFilter

ErrorInfo - Class in com.lantanagroup.link.spring

ErrorInfo(HttpServletRequest, HttpServletResponse) - Constructor for class com.lantanagroup.link.spring.ErrorInfo

EvaluationMetric - Class in com.lantanagroup.link.model

EvaluationMetric() - Constructor for class com.lantanagroup.link.model.EvaluationMetric

Events - Class in com.lantanagroup.link.db.model.tenant

NOTE: Additions/changes to this class should be modified in FhirBundler and TenantController

Events() - Constructor for class com.lantanagroup.link.db.model.tenant.Events

EventService - Class in com.lantanagroup.link

EventService() - Constructor for class com.lantanagroup.link.EventService

EventTypes - Enum Class in com.lantanagroup.link

execute() - Method in class com.lantanagroup.link.db.SQLCSHelper

execute(TenantService, ReportCriteria, ReportContext) - Method in interface com.lantanagroup.link.IReportGenerationEvent

execute(TenantService, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in interface com.lantanagroup.link.IReportGenerationEvent

execute(TenantService, ReportCriteria, ReportContext, QueryPhase) - Method in class com.lantanagroup.link.query.uscore.Query

execute(TenantService, List<DomainResource>) - Method in class com.lantanagroup.link.ApplyConceptMaps

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CodeSystemCleanup

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.ContainedResourceCleanup

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CopyLocationAliasToType

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CopyLocationIdentifierToType

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.EncounterStatusTransformer

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.FixPeriodDates

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.FixResourceId

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.PatientDataResourceFilter

execute(TenantService, List<DomainResource>, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in interface com.lantanagroup.link.IReportGenerationDataEvent

execute(TenantService, Bundle) - Method in class com.lantanagroup.link.ApplyConceptMaps

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CodeSystemCleanup

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.ContainedResourceCleanup

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CopyLocationAliasToType

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.CopyLocationIdentifierToType

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.EncounterStatusTransformer

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.FixPeriodDates

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.FixResourceId

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.events.PatientDataResourceFilter

execute(TenantService, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in interface com.lantanagroup.link.IReportGenerationDataEvent

execute(ReportCriteria, ReportContext, List<PatientOfInterestModel>, QueryPhase) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

execute(Connection, Resource) - Static method in class com.lantanagroup.link.db.SQLScriptExecutor

executeInitiateRequest(TenantService, BulkStatus, ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

executeQuery() - Method in class com.lantanagroup.link.db.SQLCSHelper

executeQueryAndRetrieval(String) - Method in class com.lantanagroup.link.api.controller.BulkController

executeStatusCheck(TenantService, BulkStatus) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

executeUpdate() - Method in class com.lantanagroup.link.db.SQLCSHelper

expandEnvVars(String) - Static method in class com.lantanagroup.link.Helper

EXPRESSION - Enum constant in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

expungeData(String, LinkCredentials, HttpServletRequest) - Method in class com.lantanagroup.link.api.controller.DataController

Deletes all census lists, patient data bundles, and measure reports stored on the server if their retention period has been reached.

extendMessageConverters(List<HttpMessageConverter<?>>) - Method in class com.lantanagroup.link.spring.YamlMessageConfiguration

F

FhirBundler - Class in com.lantanagroup.link

FhirBundler(EventService, TenantService, ApiConfig) - Constructor for class com.lantanagroup.link.FhirBundler

FhirBundlerEntrySorter - Class in com.lantanagroup.link

FhirBundlerEntrySorter() - Constructor for class com.lantanagroup.link.FhirBundlerEntrySorter

fhirContext - Static variable in class com.lantanagroup.link.db.mappers.BaseMapper

FhirContextProvider - Class in com.lantanagroup.link

FhirContextProvider() - Constructor for class com.lantanagroup.link.FhirContextProvider

FhirDataProvider - Class in com.lantanagroup.link

FhirDataProvider(IGenericClient) - Constructor for class com.lantanagroup.link.FhirDataProvider

FhirDataProvider(String) - Constructor for class com.lantanagroup.link.FhirDataProvider

FhirHelper - Class in com.lantanagroup.link

FhirHelper() - Constructor for class com.lantanagroup.link.FhirHelper

FhirJsonDeserializer<T> - Class in com.lantanagroup.link.serialize

FhirJsonDeserializer(IParser) - Constructor for class com.lantanagroup.link.serialize.FhirJsonDeserializer

FhirJsonSerializer<T extends org.hl7.fhir.instance.model.api.IBaseResource> - Class in com.lantanagroup.link.serialize

FhirJsonSerializer(IParser, Class<T>) - Constructor for class com.lantanagroup.link.serialize.FhirJsonSerializer

FhirQuery - Class in com.lantanagroup.link.db.model.tenant

FhirQuery() - Constructor for class com.lantanagroup.link.db.model.tenant.FhirQuery

fhirQueryServer - Variable in class com.lantanagroup.link.query.uscore.PatientScoop

FhirScanner - Class in com.lantanagroup.link

FhirScanner() - Constructor for class com.lantanagroup.link.FhirScanner

FHIRSenderConfig - Class in com.lantanagroup.link.config.sender

FHIRSenderConfig() - Constructor for class com.lantanagroup.link.config.sender.FHIRSenderConfig

FileSystemSenderConfig - Class in com.lantanagroup.link.config.sender

FileSystemSenderConfig() - Constructor for class com.lantanagroup.link.config.sender.FileSystemSenderConfig

FileSystemSenderConfig.Formats - Enum Class in com.lantanagroup.link.config.sender

filterCodingsByPathList(DomainResource, List<String>) - Method in class com.lantanagroup.link.ApplyConceptMaps

filterResourcesByPathList(DomainResource, List<String>) - Method in class com.lantanagroup.link.ApplyConceptMaps

findAll() - Method in class com.lantanagroup.link.db.repositories.BulkStatusRepository

findAll() - Method in class com.lantanagroup.link.db.repositories.BulkStatusResultRepository

findAll() - Method in class com.lantanagroup.link.db.repositories.ConceptMapRepository

findAll() - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

findAll() - Method in class com.lantanagroup.link.db.repositories.ReportRepository

findByCategory(String, String) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

findById(String) - Method in class com.lantanagroup.link.db.repositories.ConceptMapRepository

findById(String) - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

findById(String) - Method in class com.lantanagroup.link.db.repositories.ReportRepository

findById(UUID) - Method in class com.lantanagroup.link.db.repositories.BulkStatusRepository

findById(UUID) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

findByMeasureIdAndReportingPeriod(String, String, String) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

findByPatientId(String) - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

findByPatientListId(UUID) - Method in class com.lantanagroup.link.db.repositories.ReportRepository

findByReportId(String) - Method in class com.lantanagroup.link.db.repositories.AggregateRepository

findByReportId(String) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

findByReportId(String) - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

findByReportId(String) - Method in class com.lantanagroup.link.db.repositories.ValidationCategoryRepository

findByReportIdAndMeasureId(String, String) - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

findCodeableConcepts(Object) - Static method in class com.lantanagroup.link.FhirScanner

findCodings(Object) - Static method in class com.lantanagroup.link.FhirScanner

Finds any instance (recursively) of a CodeableConcept or Coding within the specified object

findLogMessages(Date, Date, String[], int, String) - Method in class com.lantanagroup.link.db.SharedService

findPatientData(String) - Method in class com.lantanagroup.link.db.TenantService

findPatientList(String, String, String) - Method in class com.lantanagroup.link.db.TenantService

findPendingWithUrl() - Method in class com.lantanagroup.link.db.repositories.BulkStatusRepository

findPeriods(Object) - Static method in class com.lantanagroup.link.FhirScanner

findReferences(Object) - Static method in class com.lantanagroup.link.FhirScanner

Finds any instance (recursively) of a Reference within the specified object

findUser(String) - Method in class com.lantanagroup.link.db.SharedService

findValidationResultCategoriesByReport(String) - Method in class com.lantanagroup.link.db.TenantService

findValidationResults(String, OperationOutcome.IssueSeverity, String) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

findValidationResultsByCategory(String, String) - Method in class com.lantanagroup.link.db.TenantService

FixDates() - Method in class com.lantanagroup.link.PeriodDateFixer

FixPeriodDates - Class in com.lantanagroup.link.events

Ensures that Period.start has the same precision as Period.end

FixPeriodDates() - Constructor for class com.lantanagroup.link.events.FixPeriodDates

FixResourceId - Class in com.lantanagroup.link.events

Looks for resources that have an ID with more than 64 characters and replaces it with a hash of the ID.

FixResourceId() - Constructor for class com.lantanagroup.link.events.FixResourceId

format(Duration) - Static method in class com.lantanagroup.link.time.Stopwatch

G

generate(ReportCriteria, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.GenericAggregator

generate(ReportCriteria, ReportContext.MeasureContext) - Method in interface com.lantanagroup.link.IReportAggregator

generate(QueryPhase) - Method in class com.lantanagroup.link.api.ReportGenerator

This method accepts a list of patients and generates an individual measure report for each patient.

Generate - Enum constant in enum class com.lantanagroup.link.db.model.AuditTypes

Generation of report

GenerateAndSubmitReportTask - Class in com.lantanagroup.link.api.scheduling

GenerateAndSubmitReportTask() - Constructor for class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

generateBundle(TenantService, Report, EventService, ApiConfig) - Static method in class com.lantanagroup.link.Helper

generateBundle(Collection<Aggregate>, Report) - Method in class com.lantanagroup.link.FhirBundler

generateMeasureReport(TenantService, StopwatchManager, ReportCriteria, ReportContext, ReportContext.MeasureContext, ApiConfig, PatientOfInterestModel) - Static method in class com.lantanagroup.link.api.MeasureEvaluator

generateReport(LinkCredentials, HttpServletRequest, String, GenerateRequest) - Method in class com.lantanagroup.link.api.controller.ReportController

generateReport(LinkCredentials, HttpServletRequest, String, String, String, String, boolean, boolean) - Method in class com.lantanagroup.link.api.controller.ReportController

to be invoked when only a multiMeasureBundleId is provided

GenerateReport - Class in com.lantanagroup.link.db.model.tenant

GenerateReport() - Constructor for class com.lantanagroup.link.db.model.tenant.GenerateReport

GenerateRequest - Class in com.lantanagroup.link.model

GenerateRequest() - Constructor for class com.lantanagroup.link.model.GenerateRequest

generateToken(HttpServletRequest) - Method in class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

GenericAggregator - Class in com.lantanagroup.link

GenericAggregator() - Constructor for class com.lantanagroup.link.GenericAggregator

GenericSender - Class in com.lantanagroup.link

GenericSender() - Constructor for class com.lantanagroup.link.GenericSender

getAcceptable() - Method in class com.lantanagroup.link.model.ValidationCategory

getAddress() - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.address
This issuer is connection string used to connect to an azure blog storage endpoint

getAddress() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The address of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

getAddressLine() - Method in class com.lantanagroup.link.db.model.tenant.Address

getAfterApplyConceptMaps() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterBundling() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterMeasureEval() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterMeasureResolution() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterPatientDataQuery() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterPatientDataStore() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterPatientOfInterestLookup() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterPatientResourceQuery() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAfterReportStore() - Method in class com.lantanagroup.link.db.model.tenant.Events

getAggregates(String) - Method in class com.lantanagroup.link.db.TenantService

getAlgorithm() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.algorithm
The algorithm used by the identity provider to sign the jwt token

getAllBulkStatuses(String) - Method in class com.lantanagroup.link.api.controller.BulkController

getAllConceptMaps() - Method in class com.lantanagroup.link.db.TenantService

getAllDatabaseNames(String) - Method in class com.lantanagroup.link.db.SharedService

getAllowedCredentials() - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-credentials
True or false to allow credentials in CORS.

getAllowedHeaders() - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-headers
Space-separated list of allowed headers.

getAllowedMethods() - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-methods
An array of strings representing which methods (ex: GET, PUT, POST) are allowed in CORS requests

getAllowedOrigins() - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-origins
Space-separated list of allowed origins.

getAllPatientLists() - Method in class com.lantanagroup.link.db.TenantService

getAllReports() - Method in class com.lantanagroup.link.db.SharedService

getApikey() - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.AzureAuth

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.BasicAuth

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.BasicAuthAndApiKeyHeader

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.CernerAuth

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.EpicAuth

getApiKeyHeader() - Method in interface com.lantanagroup.link.query.auth.ICustomAuth

getApiKeyHeader() - Method in class com.lantanagroup.link.query.auth.TokenAuth

getApplyConceptMaps() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getAudience() - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

getAudits() - Method in class com.lantanagroup.link.db.SharedService

getAuthClass() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

The class that should be used (if any) to authenticate queries to the EHR's FHIR server.

getAuthConfig() - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

sender.fhir.auth-config

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.AzureAuth

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.BasicAuth

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.BasicAuthAndApiKeyHeader

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.CernerAuth

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.EpicAuth

getAuthHeader() - Method in interface com.lantanagroup.link.query.auth.ICustomAuth

getAuthHeader() - Method in class com.lantanagroup.link.query.auth.TokenAuth

getAuthJwksUrl() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.auth-jwks-url
The url endpoint for certs from the identity provider, which is used to verify any JSON Web Token (JWT)

getAuthUrl() - Method in class com.lantanagroup.link.config.SwaggerConfig

getAverage() - Method in class com.lantanagroup.link.model.EvaluationMetric

getAverage() - Method in class com.lantanagroup.link.model.QueryTimeMetric

getAverage() - Method in class com.lantanagroup.link.model.ValidationMetric

getAzureAuth() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by AzureAuth implementation

getAzureStorageContainerName() - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.azure-storage-container-name
This is the name of the azure blog storage container

getBasicAuth() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by BasicAuth implementation

getBasicAuthAndApiKey() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by BasicAuthAndApiKeyHeader implementation

getBeans(TenantService, EventTypes) - Method in class com.lantanagroup.link.EventService

getBeans(List<Class<?>>) - Method in class com.lantanagroup.link.EventService

getBeforeBundling() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforeMeasureEval() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforeMeasureResolution() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforePatientDataQuery() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforePatientDataStore() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforePatientOfInterestLookup() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBeforeReportStore() - Method in class com.lantanagroup.link.db.model.tenant.Events

getBody() - Method in class com.lantanagroup.link.db.model.Query

getBuild() - Method in class com.lantanagroup.link.model.ApiVersionModel

getBulkDataCron() - Method in class com.lantanagroup.link.db.model.tenant.Schedule

getBulkDataFollowUpCron() - Method in class com.lantanagroup.link.db.model.tenant.Schedule

getBulkGroupId() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

getBulkInitiateResponseUrlHeader() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Header name to retrieve polling url

getBulkPendingStatusesWithPopulatedUrl() - Method in class com.lantanagroup.link.db.TenantService

getBulkStatusById(UUID) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

getBulkStatusById(UUID) - Method in class com.lantanagroup.link.db.TenantService

getBulkStatuses() - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

getBulkStatuses() - Method in class com.lantanagroup.link.db.TenantService

getBulkStatusRecord(UUID, String) - Method in class com.lantanagroup.link.api.controller.BulkController

getBulkStatusResultByStatusId(String) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

getBulkStatusResultByStatusId(String, String) - Method in class com.lantanagroup.link.api.controller.BulkController

getBulkStatusResults() - Method in class com.lantanagroup.link.db.TenantService

getBulkWaitTimeInMilliseconds() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

value that indicates the sleep time when looping retries for progress completion

getBundle() - Method in class com.lantanagroup.link.db.model.MeasureDefinition

getBundle() - Method in class com.lantanagroup.link.query.uscore.PatientData

getBundleById(String) - Method in class com.lantanagroup.link.FhirDataProvider

getBundleId() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getBundleIds() - Method in class com.lantanagroup.link.model.GenerateRequest

getBundleIds() - Method in class com.lantanagroup.link.model.ReportCriteria

getBundleType() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The type of submission bundle to create.

getBundling() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration properties for how to bundle the final submission, including contact information that is used when creating an Organization resource that represents the sending facility (the tenant).

getCaller() - Method in class com.lantanagroup.link.model.LogMessage

getCategories() - Method in class com.lantanagroup.link.ValidationCategorizer

getCategory() - Method in class com.lantanagroup.link.db.model.Metrics

getCategoryCode() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

getCdcOrgId() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Organization ID for the tenant according to CDC.

getCdcOrgId() - Method in class com.lantanagroup.link.model.GlobalReportResponse

getCdcOrgId() - Method in class com.lantanagroup.link.model.SearchTenantResponse

getCernerAuth() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by CernerAuth implementation

getCheckIpAddress() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.check-ip-address
Check if the IP address in the jwt token matches the ip address of the request

getCity() - Method in class com.lantanagroup.link.db.model.tenant.Address

getClient() - Method in class com.lantanagroup.link.FhirDataProvider

getClientCredentialsToken(String, String, String, String, boolean) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

getClientId() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.clientId

getClientId() - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

getClientId() - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

getClientId() - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

getClientId() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getClientSecret() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.clientSecret

getClientSecret() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getCode() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getCommit() - Method in class com.lantanagroup.link.model.ApiVersionModel

getConceptMap() - Method in class com.lantanagroup.link.db.model.ConceptMap

getConceptMap(String) - Method in class com.lantanagroup.link.db.TenantService

getConceptMap(String, String) - Method in class com.lantanagroup.link.api.controller.ConceptMapController

getConfig() - Method in class com.lantanagroup.link.db.TenantService

getConnectionString() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.connection-string
The connection string to use for tenant-agnostic data

getConnectionString() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The connection string to use for tenant-specific data.

getContext() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getContexts() - Method in class com.lantanagroup.link.db.model.ConceptMap

getCors() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.cors
CORS configuration used for browser interaction with the API

getCount() - Method in class com.lantanagroup.link.model.ValidationCategoryResponse

getCountry() - Method in class com.lantanagroup.link.db.model.tenant.Address

getCqfVersion() - Method in class com.lantanagroup.link.model.ApiVersionModel

getCredentialMode() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.credential-mode Either "client", "password", or "sams-password"

getCredentialsToken(LinkOAuthConfig) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

getCron() - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The CRON-formatted schedule to use for this report's generation and submission

getData() - Method in class com.lantanagroup.link.db.model.Metrics

getDatabaseName(String) - Static method in class com.lantanagroup.link.Helper

getDataRequirementTypes(Bundle) - Static method in class com.lantanagroup.link.FhirHelper

getDataRetentionCheckCron() - Method in class com.lantanagroup.link.db.model.tenant.Schedule

The CRON-formatted schedule to use for data retention checks (removing data that is outside the tenant's configured retention period).

getDataTraceId() - Method in class com.lantanagroup.link.db.model.PatientData

getDate() - Method in class com.lantanagroup.link.db.model.BulkStatus

getDate(String) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getDescription() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

A description of the tenant that is more meaningful/useful than the id.

getDetails() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getDevice(ApiConfig) - Static method in class com.lantanagroup.link.FhirHelper

getDevice(ApiConfig, TenantService) - Static method in class com.lantanagroup.link.FhirHelper

getDeviceInfo() - Method in class com.lantanagroup.link.model.ReportBase

getDocs(HttpServletRequest) - Method in class com.lantanagroup.link.api.controller.ApiController

getEmail() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The email of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

getEmail() - Method in class com.lantanagroup.link.db.model.User

getEmailAddress() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getEnabled() - Method in class com.lantanagroup.link.db.model.User

getEncryptSecret() - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

getEnd() - Method in class com.lantanagroup.link.ReportingPeriodCalculator

getEpicAuth() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by EpicAuth implementation

getEvaluation() - Method in class com.lantanagroup.link.model.MetricsReportResponse

getEvaluationService() - Method in class com.lantanagroup.link.config.api.ApiConfig

evaluation-service
The measure evaluation service (CQF-Ruler) installation that is to be used to evaluate patient data against measure logic.

getEvents() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Custom classes/functionality that can be turned on at various points during the report generation pipeline.

getEventService() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getExpression() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getFHIRAddress(Address) - Static method in class com.lantanagroup.link.FhirHelper

getFhirContext() - Static method in class com.lantanagroup.link.FhirContextProvider

getFhirDate(LocalDateTime) - Static method in class com.lantanagroup.link.Helper

getFhirDate(Date) - Static method in class com.lantanagroup.link.Helper

getFhirQuery() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration to use when querying patients of interest for their clinical data, such as Encounter, Condition, etc.

getFhirQueryClient(TenantService) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

getFhirQueryClient(TenantService, String) - Method in class com.lantanagroup.link.query.uscore.Query

getFhirQueryServer() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getFhirServerBase() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

getFhirServerBase() - Method in class com.lantanagroup.link.db.model.tenant.QueryList

getField() - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

getFormat() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getFormat() - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.format
This is the format used to send to an azure blog storage endpoint

getFormat() - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

getFormat() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getGenerateAndSubmitReports() - Method in class com.lantanagroup.link.db.model.tenant.Schedule

Configuration for when to automatically generate and submit reports.

getGeneratedTime() - Method in class com.lantanagroup.link.db.model.Report

getGuidance() - Method in class com.lantanagroup.link.model.ValidationCategory

getHistory() - Method in class com.lantanagroup.link.model.EvaluationMetric

getHistory() - Method in class com.lantanagroup.link.model.PatientsQueriedMetric

getHistory() - Method in class com.lantanagroup.link.model.PatientsReportedMetric

getHistory() - Method in class com.lantanagroup.link.model.QueryTimeMetric

getHistory() - Method in class com.lantanagroup.link.model.ValidationMetric

getHttpClient() - Method in class com.lantanagroup.link.GenericSender

getId() - Method in class com.lantanagroup.link.db.model.Aggregate

getId() - Method in class com.lantanagroup.link.db.model.Audit

getId() - Method in class com.lantanagroup.link.db.model.BulkStatus

getId() - Method in class com.lantanagroup.link.db.model.BulkStatusResult

getId() - Method in class com.lantanagroup.link.db.model.ConceptMap

getId() - Method in class com.lantanagroup.link.db.model.DataTrace

getId() - Method in class com.lantanagroup.link.db.model.MeasureDefinition

getId() - Method in class com.lantanagroup.link.db.model.MeasurePackage

getId() - Method in class com.lantanagroup.link.db.model.Metrics

getId() - Method in class com.lantanagroup.link.db.model.PatientData

getId() - Method in class com.lantanagroup.link.db.model.PatientList

getId() - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

getId() - Method in class com.lantanagroup.link.db.model.Query

getId() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

A unique ID of the tenant.

getId() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getId() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

getId() - Method in class com.lantanagroup.link.db.model.User

getId() - Method in class com.lantanagroup.link.model.PatientOfInterestModel

getId() - Method in class com.lantanagroup.link.model.ReportBase

getId() - Method in class com.lantanagroup.link.model.SearchTenantResponse

getId() - Method in class com.lantanagroup.link.model.TenantSummary

getId() - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

getId() - Method in class com.lantanagroup.link.model.ValidationCategory

getId(IBaseResource) - Static method in class com.lantanagroup.link.db.model.DataTrace

getIdentifier() - Method in class com.lantanagroup.link.db.model.PatientId

getIdentifier() - Method in class com.lantanagroup.link.model.PatientOfInterestModel

getIds() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getIds() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getInfo() - Method in class com.lantanagroup.link.api.controller.ApiController

getInfoGroups() - Method in class com.lantanagroup.link.config.api.ApiConfig

getInitial() - Method in class com.lantanagroup.link.config.query.QueryPlan

getInitial() - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

getIssuer() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.issuer
This issuer is used during token validation to ensure that the JWT has been issued by a trusted system

getJsonList(String, Class<U>) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getJsonObject(String, Class<U>) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getJwt() - Method in class com.lantanagroup.link.auth.LinkCredentials

getJwt(EpicAuth) - Static method in class com.lantanagroup.link.query.auth.EpicAuth

getKey() - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

getLastSubmissionDate() - Method in class com.lantanagroup.link.model.TenantSummary

getLastSubmissionId() - Method in class com.lantanagroup.link.model.TenantSummary

getLastUpdated() - Method in class com.lantanagroup.link.db.model.MeasureDefinition

getLastUpdated() - Method in class com.lantanagroup.link.db.model.PatientList

getLinks() - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSection

getListId() - Method in class com.lantanagroup.link.db.model.tenant.EhrPatientList

getLists() - Method in class com.lantanagroup.link.db.model.tenant.QueryList

getLiteral() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getLiteral() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getLogs(String, String, String[], int, String) - Method in class com.lantanagroup.link.api.controller.LogController

getLongName() - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

getLookback() - Method in class com.lantanagroup.link.config.query.QueryPlan

getLookback() - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

getMainLibraries(Bundle) - Static method in class com.lantanagroup.link.FhirHelper

getMasterIdentifierValue() - Method in class com.lantanagroup.link.model.ReportContext

getMasterIdentifierValue(ReportCriteria) - Static method in class com.lantanagroup.link.ReportIdHelper

getMasterMeasureReportId(String, String) - Static method in class com.lantanagroup.link.ReportIdHelper

getMaxRetry() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.max-retry
The number of times the API should try to check that prerequisite services are available.

getMeasure() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getMeasure(Bundle) - Static method in class com.lantanagroup.link.FhirHelper

getMeasureContexts() - Method in class com.lantanagroup.link.model.ReportContext

getMeasureDefinition(String) - Method in class com.lantanagroup.link.db.SharedService

getMeasureDefinitions() - Method in class com.lantanagroup.link.db.SharedService

getMeasureDefUrls() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.measure-def-urls
A set of URLs representing the latest measure definition, keyed by measure ID

getMeasureEvaluationThreads() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.measure-evaluation-threads
The number of threads to use for patient measure report generation.

getMeasureId() - Method in class com.lantanagroup.link.db.model.Aggregate

getMeasureId() - Method in class com.lantanagroup.link.db.model.MeasureDefinition

getMeasureId() - Method in class com.lantanagroup.link.db.model.PatientList

getMeasureId() - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

getMeasureId() - Method in class com.lantanagroup.link.db.model.tenant.EhrPatientList

getMeasureIds() - Method in class com.lantanagroup.link.db.model.MeasurePackage

getMeasureIds() - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The IDs of the measures to generate the report for

getMeasureIds() - Method in class com.lantanagroup.link.model.ReportBase

getMeasurePackage(String) - Method in class com.lantanagroup.link.db.SharedService

getMeasurePackages() - Method in class com.lantanagroup.link.db.SharedService

getMeasureReport() - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

getMeasureReport() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getMeasureReport(String, Parameters) - Method in class com.lantanagroup.link.FhirDataProvider

getMeasures() - Method in class com.lantanagroup.link.model.TenantSummary

getMessage() - Method in class com.lantanagroup.link.model.LogMessage

getMessage() - Method in class com.lantanagroup.link.model.TestResponse

getMessages() - Method in class com.lantanagroup.link.model.LogSearchResponse

getMetricReport(String, String, String) - Method in class com.lantanagroup.link.api.controller.MetricController

Returns calculated metrics based on the supplied reporting period and optional parameters.

getMetrics(LocalDate, LocalDate, String, String) - Method in class com.lantanagroup.link.db.SharedService

getName() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.name
The name of the application that's returned in Device instances of reports

getName() - Method in class com.lantanagroup.link.config.api.ApiInfoGroup

getName() - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSection

getName() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getName() - Method in class com.lantanagroup.link.db.model.Audit

getName() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The name of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

getName() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getName() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The name of the tenant, such as the facility's name.

getName() - Method in class com.lantanagroup.link.db.model.User

getName() - Method in class com.lantanagroup.link.model.SearchTenantResponse

getName() - Method in class com.lantanagroup.link.model.TenantSummary

getName(List<HumanName>) - Static method in class com.lantanagroup.link.FhirHelper

getNetwork() - Method in class com.lantanagroup.link.db.model.Audit

getNhsnOrgId() - Method in class com.lantanagroup.link.model.TenantSummary

getNotes() - Method in class com.lantanagroup.link.db.model.Audit

getNpi() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The National Provider Identifier (NPI) of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.identifier field

getOnRegeneration() - Method in class com.lantanagroup.link.db.model.tenant.Events

getOperationType() - Method in class com.lantanagroup.link.config.query.ReferencesConfig

getOperationType() - Method in class com.lantanagroup.link.db.model.tenant.ReferencesConfig

getOrCreateGroupAndPopulation(MeasureReport, MeasureReport.MeasureReportGroupPopulationComponent, MeasureReport.MeasureReportGroupComponent) - Method in class com.lantanagroup.link.GenericAggregator

getOrder() - Method in class com.lantanagroup.link.spring.ErrorFilter

getOriginalResource() - Method in class com.lantanagroup.link.db.model.DataTrace

getOutput() - Method in class com.lantanagroup.link.model.BulkResponse

getPackageId() - Method in class com.lantanagroup.link.model.GenerateRequest

getPackageId() - Method in class com.lantanagroup.link.model.ReportCriteria

getPaged() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getPaged() - Method in class com.lantanagroup.link.config.query.ReferencesConfig

getPaged() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getPaged() - Method in class com.lantanagroup.link.db.model.tenant.ReferencesConfig

getParallelPatients() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

The number of patients to query for in parallel using separate threads.

getParameters() - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

getParameters() - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

getParameters(String, String) - Static method in class com.lantanagroup.link.db.mappers.ValidationResultMapper

getPassword() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.password

getPassword() - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuth

getPassword() - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

getPassword() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getPasswordHash() - Method in class com.lantanagroup.link.db.model.User

getPasswordSalt() - Method in class com.lantanagroup.link.db.model.User

getPath() - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

getPatientDataBundleId(String, String) - Static method in class com.lantanagroup.link.ReportIdHelper

getPatientId() - Method in class com.lantanagroup.link.db.model.DataTrace

getPatientId() - Method in class com.lantanagroup.link.db.model.PatientData

getPatientId() - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

getPatientIdentifierListJSON(String, String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

getPatientIdResolver() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.patient-id-resolver
The class used to determine the list of patient ids that should be queried for

getPatientList(UUID) - Method in class com.lantanagroup.link.db.TenantService

getPatientList(UUID, String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

getPatientLists() - Method in class com.lantanagroup.link.model.ReportContext

getPatientLists(Report) - Method in class com.lantanagroup.link.FhirBundler

getPatientLists(String) - Method in class com.lantanagroup.link.db.TenantService

getPatientMeasureReport(String) - Method in class com.lantanagroup.link.db.TenantService

getPatientMeasureReport(String, String) - Method in class com.lantanagroup.link.api.controller.ReportController

getPatientMeasureReportId(String, String) - Static method in class com.lantanagroup.link.ReportIdHelper

getPatientMeasureReports(String) - Method in class com.lantanagroup.link.db.TenantService

getPatientMeasureReports(String, String) - Method in class com.lantanagroup.link.api.controller.ReportController

getPatientMeasureReports(String, String) - Method in class com.lantanagroup.link.db.TenantService

getPatientReports() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getPatientReportsByPatientId() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getPatients() - Method in class com.lantanagroup.link.db.model.PatientList

getPatientsOfInterest() - Method in class com.lantanagroup.link.model.ReportContext

getPatientsOfInterest() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getPatientsOfInterest(TenantService, ReportCriteria, ReportContext) - Method in interface com.lantanagroup.link.IPatientIdProvider

getPatientsOfInterest(QueryPhase) - Method in class com.lantanagroup.link.model.ReportContext

getPatientsOfInterest(QueryPhase) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getPatientsQueried() - Method in class com.lantanagroup.link.model.MetricsReportResponse

getPatientsReported() - Method in class com.lantanagroup.link.model.MetricsReportResponse

getPattern() - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

getPendingRequestsAndGetStatusResults(String) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

getPeriodEnd() - Method in class com.lantanagroup.link.db.model.PatientList

getPeriodEnd() - Method in class com.lantanagroup.link.model.GenerateRequest

getPeriodEnd() - Method in class com.lantanagroup.link.model.ReportBase

getPeriodEnd() - Method in class com.lantanagroup.link.model.ReportCriteria

getPeriodEndDate() - Method in class com.lantanagroup.link.model.ReportCriteria

getPeriodStart() - Method in class com.lantanagroup.link.db.model.PatientList

getPeriodStart() - Method in class com.lantanagroup.link.model.GenerateRequest

getPeriodStart() - Method in class com.lantanagroup.link.model.ReportBase

getPeriodStart() - Method in class com.lantanagroup.link.model.ReportCriteria

getPeriodStartDate() - Method in class com.lantanagroup.link.model.ReportCriteria

getPhone() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The phone of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

getPlanNames() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

getPosition() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getPostalCode() - Method in class com.lantanagroup.link.db.model.tenant.Address

getPreAuthenticatedCredentials(HttpServletRequest) - Method in class com.lantanagroup.link.api.auth.PreAuthTokenHeaderFilter

getPreAuthenticatedPrincipal(HttpServletRequest) - Method in class com.lantanagroup.link.api.auth.PreAuthTokenHeaderFilter

getPretty() - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

getProgressHeaderCompleteValue() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

value that indicates bulk export is ready to retrieve

getProgressHeaderName() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Header name for progress status.

getProperties() - Method in class com.lantanagroup.link.spring.ErrorInfo

getPublicAddress() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.public-address
The public endpoint address for the API (i.e.

getQueryId() - Method in class com.lantanagroup.link.db.model.DataTrace

getQueryList() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration that should be used for /api/{tenantId}/poi/$query-list to query the EHR's FHIR List for patients of interest

getQueryPatientListCron() - Method in class com.lantanagroup.link.db.model.tenant.Schedule

The CRON-formatted schedule to use querying patient list information from the EHR.

getQueryPlan() - Method in class com.lantanagroup.link.model.ReportContext

getQueryPlanId() - Method in class com.lantanagroup.link.model.ReportCriteria

getQueryPlans() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

getQueryTime() - Method in class com.lantanagroup.link.model.MetricsReportResponse

getQueryType() - Method in class com.lantanagroup.link.db.model.Query

getRandomSalt() - Static method in class com.lantanagroup.link.Hasher

getReason() - Method in class com.lantanagroup.link.auth.SamsTokenResult

getReference() - Method in class com.lantanagroup.link.db.model.PatientId

getReference() - Method in class com.lantanagroup.link.model.PatientOfInterestModel

getReferences() - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

getReferences() - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

getRegenerateIfExists() - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

If a report already exists for the calculated reporting period and measures, indicates whether or not the report generation process should continue and overwrite the already existing report.

getRegex() - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

getRelativeBulkUrl() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

ex /R4/Group/{groupId}/$export?_type=patient,medicationrequest,medication

getRemoteAddress(HttpServletRequest) - Static method in class com.lantanagroup.link.db.SharedService

getRemoteAddress(HttpServletRequest) - Static method in class com.lantanagroup.link.FhirHelper

getReport() - Method in class com.lantanagroup.link.db.model.Aggregate

getReport(String) - Method in class com.lantanagroup.link.db.TenantService

getReportAggregates(String, String) - Method in class com.lantanagroup.link.api.controller.ReportController

getReportAggregator() - Method in class com.lantanagroup.link.config.api.ApiConfig

getReportDefBundle() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getReportId() - Method in class com.lantanagroup.link.db.model.Aggregate

getReportId() - Method in class com.lantanagroup.link.db.model.Metrics

getReportId() - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

getReportId() - Method in class com.lantanagroup.link.db.model.Query

getReportId() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getReportId() - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

getReportingPeriodMethod() - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The method that should be used to calculate the reporting period for the report.

getReportingPlan() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration for how to query the MRP (reporting plan) interface at CDC/NHSN to determine if a facility/tenant is signed up to report during the calculated reporting period.

getReportPatientLists(String, String) - Method in class com.lantanagroup.link.api.controller.ReportController

getReports(String, String, String, String, String, int, int) - Method in class com.lantanagroup.link.api.controller.GlobalReportController

getReportsByPatientListId(UUID) - Method in class com.lantanagroup.link.db.TenantService

getRequest() - Method in class com.lantanagroup.link.model.BulkResponse

getRequest() - Method in class com.lantanagroup.link.model.ReportContext

getResource() - Method in class com.lantanagroup.link.db.model.PatientData

getResource() - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

getResource(String) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getResource(String, Class<U>) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getResourceId() - Method in class com.lantanagroup.link.db.model.DataTrace

getResourceId() - Method in class com.lantanagroup.link.db.model.PatientData

getResourceType() - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

getResourceType() - Method in class com.lantanagroup.link.db.model.DataTrace

getResourceType() - Method in class com.lantanagroup.link.db.model.PatientData

getResourceType() - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

getResult() - Method in class com.lantanagroup.link.db.model.BulkStatusResult

getResultSetFromBulkResultAndLoadPatientData(BulkStatusResult, TenantService, ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

getRetentionPeriod() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

ISO 8601 formatted duration in which to keep data for each tenant.

getRetentionPeriod() - Method in class com.lantanagroup.link.model.SearchTenantResponse

getRetrieved() - Method in class com.lantanagroup.link.db.model.PatientData

getRetrieved() - Method in class com.lantanagroup.link.db.model.Query

getRetryWait() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.retry-wait
The number of milliseconds the API should wait in between attempts at checking that prerequisite services are available.

getRules() - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

getRuleSets() - Method in class com.lantanagroup.link.validation.RuleBasedValidationCategory

getSamsAuth() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

getSamsToken(LinkOAuthConfig) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

getScheduling() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Schedule configuration for the tenant that can be used to automatically begin processes such as querying for patient lists, data retention, and automatic generation and submission of reports.

getScope() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.scope

getScope() - Method in class com.lantanagroup.link.config.SwaggerConfig

getScopes() - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

getSecret() - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.secret
This issued sas token is for access to the azure blog storage container

getSecret() - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

getSecret() - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

getSections() - Method in class com.lantanagroup.link.config.api.ApiInfoGroup

getSender() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.sender
The class used to send reports

getServiceId() - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.serviceId
This is the azure blog storage service Id

getSeverity() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

getSeverity() - Method in class com.lantanagroup.link.model.LogMessage

getSeverity() - Method in class com.lantanagroup.link.model.ValidationCategory

getShortName() - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

getShouldPersist() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getSkipInit() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.skip-init
If true, init processes (loading measure bundles and resources into the internal FHIR server) should be skipped

getSocketTimeout() - Method in class com.lantanagroup.link.config.api.ApiConfig

getSQLConnection() - Method in class com.lantanagroup.link.db.SharedService

getSQLConnection(String) - Method in class com.lantanagroup.link.db.SharedService

Deprecated.

getStart() - Method in class com.lantanagroup.link.ReportingPeriodCalculator

getState() - Method in class com.lantanagroup.link.db.model.tenant.Address

getStatistics() - Method in class com.lantanagroup.link.time.StopwatchManager

getStatus() - Method in class com.lantanagroup.link.auth.SamsTokenResult

getStatus() - Method in class com.lantanagroup.link.db.model.BulkStatus

getStatus() - Method in class com.lantanagroup.link.db.model.Report

getStatus(BulkStatus, TenantService, ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

getStatusId() - Method in class com.lantanagroup.link.db.model.BulkStatusResult

getStatusUrl() - Method in class com.lantanagroup.link.db.model.BulkStatus

getStopwatchManager() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getString(String) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getSubmittedTime() - Method in class com.lantanagroup.link.db.model.Report

getSuccess() - Method in class com.lantanagroup.link.model.TestResponse

getSupplemental() - Method in class com.lantanagroup.link.config.query.QueryPlan

getSupplemental() - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

getTaskName() - Method in class com.lantanagroup.link.db.model.Metrics

getTenant(String) - Method in class com.lantanagroup.link.api.controller.TenantController

getTenantConfig(String) - Method in class com.lantanagroup.link.db.SharedService

getTenantConfigs() - Method in class com.lantanagroup.link.db.SharedService

getTenantConnectionStrings(String) - Method in class com.lantanagroup.link.db.SharedService

getTenantId() - Method in class com.lantanagroup.link.db.model.Audit

getTenantId() - Method in class com.lantanagroup.link.db.model.Metrics

getTenantId() - Method in class com.lantanagroup.link.model.GlobalReportResponse

getTenantJsonSchema() - Method in class com.lantanagroup.link.api.controller.ApiController

getTenantName() - Method in class com.lantanagroup.link.model.GlobalReportResponse

getTenants() - Method in class com.lantanagroup.link.model.TenantSummaryResponse

getTenantService() - Method in class com.lantanagroup.link.query.uscore.PatientScoop

getTenantSummary(String, TenantSummarySort, boolean) - Method in class com.lantanagroup.link.db.SharedService

getTerminologyService() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.terminology-service
The FHIR terminology service to use for storing ValueSet and CodeSystem resources, passed to the evaluation-service for use during measure evaluation.

getTimestamp() - Method in class com.lantanagroup.link.db.model.Audit

getTimestamp() - Method in class com.lantanagroup.link.db.model.Metrics

getTimestamp() - Method in class com.lantanagroup.link.model.LogMessage

getTimeZoneId() - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The Time Zone string for the Tenant

getTitle() - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSectionLink

getTitle() - Method in class com.lantanagroup.link.model.ValidationCategory

getToken() - Method in class com.lantanagroup.link.db.model.tenant.auth.TokenAuth

getToken(LinkOAuthConfig) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

getToken(LinkOAuthConfig, CloseableHttpClient) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

getTokenAuth() - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by TokenAuth implementation

getTokenUrl() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.tokenUrl

getTokenUrl() - Method in class com.lantanagroup.link.config.SwaggerConfig

getTokenUrl() - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

getTokenUrl() - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

getTokenUrl() - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

getTokenUrl() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getTokenValidationEndpoint() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.tokenValidationEndpoint
The url for the identity provider's token validation endpoint

getTokenVerificationClass() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.tokenVerificationClass
The class configured to verify a jwt token in the api

getTotal() - Method in class com.lantanagroup.link.model.LogSearchResponse

getTotal() - Method in class com.lantanagroup.link.model.PatientsQueriedMetric

getTotal() - Method in class com.lantanagroup.link.model.PatientsReportedMetric

getTotal() - Method in class com.lantanagroup.link.model.TenantSummaryResponse

getTransactionTime() - Method in class com.lantanagroup.link.model.BulkResponse

getType() - Method in class com.lantanagroup.link.db.model.Audit

getType() - Method in class com.lantanagroup.link.model.BulkOutput

getType() - Method in class com.lantanagroup.link.model.ValidationCategory

getUncategorized(String) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

getUncategorizedValidationResults(String) - Method in class com.lantanagroup.link.db.TenantService

getUncategorizedValidationResults(String, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Retrieves the validation results for a report that are not categorized

getUrl() - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSectionLink

getUrl() - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

sender.fhir.url

getUrl() - Method in class com.lantanagroup.link.db.model.Query

getUrl() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

getUrl() - Method in class com.lantanagroup.link.model.BulkOutput

getUser() - Method in class com.lantanagroup.link.auth.LinkCredentials

getUser() - Method in class com.lantanagroup.link.model.ReportContext

getUser(UUID) - Method in class com.lantanagroup.link.api.controller.UserController

getUser(UUID) - Method in class com.lantanagroup.link.db.SharedService

getUserId() - Method in class com.lantanagroup.link.db.model.Audit

getUsername() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.username

getUsername() - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuth

getUsername() - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

getUsername() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

getUUID(String) - Method in class com.lantanagroup.link.db.mappers.BaseMapper.Row

getValidateFhirServer() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.validate-fhir-server
Boolean for whether to check for metadata before request or not

getValidation() - Method in class com.lantanagroup.link.model.MetricsReportResponse

getValidationCategories(String, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Retrieves the validation categories for a report

getValidationCategoryResults(String, String, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Retrieves the validation results for a report that are categorized

getValidationForCustomCategories(String, String, List<RuleBasedValidationCategory>) - Method in class com.lantanagroup.link.api.controller.ValidationController

Retrieves the validation categories for a report, for a custom set of categories

getValidationForCustomCategory(String, String, String, List<RuleBasedValidationCategory>) - Method in class com.lantanagroup.link.api.controller.ValidationController

Retrieves the validation results for a report, for a custom set of categories, for a specific category.

getValidationIssuesForReport(String, String, OperationOutcome.IssueSeverity, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Gets the validation results for a stored report

getValidationResultId() - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

getValidationResults(String) - Method in class com.lantanagroup.link.db.TenantService

getValidationResults(String, OperationOutcome.IssueSeverity, String) - Method in class com.lantanagroup.link.db.TenantService

getValidationResultsOperationOutcome(String, OperationOutcome.IssueSeverity, String) - Method in class com.lantanagroup.link.db.TenantService

getValidationSummary(String, String, OperationOutcome.IssueSeverity, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Provides a summary of unique messages from validation results

getVariable() - Method in class com.lantanagroup.link.config.query.ParameterConfig

getVariable() - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

getVersion() - Method in class com.lantanagroup.link.db.model.Report

getVersion() - Method in class com.lantanagroup.link.model.ApiVersionModel

getVersionInfo() - Method in class com.lantanagroup.link.api.controller.ApiController

getVersionInfo(String) - Static method in class com.lantanagroup.link.Helper

GlobalReportController - Class in com.lantanagroup.link.api.controller

GlobalReportController() - Constructor for class com.lantanagroup.link.api.controller.GlobalReportController

GlobalReportResponse - Class in com.lantanagroup.link.model

GlobalReportResponse() - Constructor for class com.lantanagroup.link.model.GlobalReportResponse

H

handle(HttpServletRequest, HttpServletResponse) - Method in class com.lantanagroup.link.spring.ErrorController

handledType() - Method in class com.lantanagroup.link.serialize.FhirJsonSerializer

handleException(SQLServerException) - Static method in class com.lantanagroup.link.db.SQLServerHelper

HapiFhirAuthenticationInterceptor - Class in com.lantanagroup.link.query.auth

HapiFhirAuthenticationInterceptor(TenantService, ApplicationContext) - Constructor for class com.lantanagroup.link.query.auth.HapiFhirAuthenticationInterceptor

hasCredentialProperties() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

hasEmail() - Method in class com.lantanagroup.link.db.model.User

hash(String...) - Static method in class com.lantanagroup.link.ReportIdHelper

hash(String, byte[]) - Static method in class com.lantanagroup.link.Hasher

hashCode() - Method in class com.lantanagroup.link.db.model.PatientId

Hasher - Class in com.lantanagroup.link

Used for creating a hash of (for example) passwords.

Hasher() - Constructor for class com.lantanagroup.link.Hasher

hasNonzeroPopulationCount(MeasureReport) - Static method in class com.lantanagroup.link.FhirHelper

hasPassword() - Method in class com.lantanagroup.link.db.model.User

Helper - Class in com.lantanagroup.link

Helper() - Constructor for class com.lantanagroup.link.Helper

I

IAzureBlobStorageSender - Interface in com.lantanagroup.link

ICustomAuth - Interface in com.lantanagroup.link.query.auth

IdentifierSystem - Static variable in class com.lantanagroup.link.Constants

IMPORTANT - Enum constant in enum class com.lantanagroup.link.model.ValidationCategoryTypes

IN_PROGRESS - Static variable in class com.lantanagroup.link.db.model.BulkStatuses

incrementMajorVersion(Report) - Static method in class com.lantanagroup.link.FhirHelper

incrementMinorVersion(Report) - Static method in class com.lantanagroup.link.api.controller.ReportController

Increments the minor version of the specified report

IndividualMeasureReportProfileUrl - Static variable in class com.lantanagroup.link.Constants

INFORMATION - Enum constant in enum class com.lantanagroup.link.model.ValidationCategorySeverities

init() - Method in class com.lantanagroup.link.api.ApiInit

init() - Method in class com.lantanagroup.link.api.scheduling.Scheduler

init() - Method in class com.lantanagroup.link.validation.Validator

initBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.BulkController

initBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.DataController

initBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.QAController

initBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.ReportController

initDatabase() - Method in class com.lantanagroup.link.db.SharedService

initDatabase() - Method in class com.lantanagroup.link.db.TenantService

INITIAL - Enum constant in enum class com.lantanagroup.link.query.QueryPhase

initializeBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.ConceptMapController

initializeBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.MeasureDefController

initializeBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.MeasurePackageController

initializeBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.TenantController

initializeBinder(WebDataBinder) - Method in class com.lantanagroup.link.api.controller.UserController

initiateBulkDataRequest(String) - Method in class com.lantanagroup.link.api.controller.BulkController

InitiateBulkDataRequest(BulkStatus) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

InitiateBulkDataRequestTask - Class in com.lantanagroup.link.api.bulk

InitiateBulkDataRequestTask() - Constructor for class com.lantanagroup.link.api.bulk.InitiateBulkDataRequestTask

initSerializers(SimpleModule, IParser) - Static method in class com.lantanagroup.link.FhirHelper

insert(Query) - Method in class com.lantanagroup.link.db.repositories.QueryRepository

insertAll(String, List<ValidationResult>) - Method in class com.lantanagroup.link.db.repositories.ValidationRepository

insertAll(List<DataTrace>) - Method in class com.lantanagroup.link.db.repositories.DataTraceRepository

insertAll(List<ValidationResultCategory>) - Method in class com.lantanagroup.link.db.repositories.ValidationCategoryRepository

insertValidationResultCategories(List<ValidationResultCategory>) - Method in class com.lantanagroup.link.db.TenantService

insertValidationResults(String, OperationOutcome) - Method in class com.lantanagroup.link.db.TenantService

interceptRequest(IHttpRequest) - Method in class com.lantanagroup.link.query.auth.HapiFhirAuthenticationInterceptor

interceptResponse(IHttpRequest, IHttpResponse) - Method in class com.lantanagroup.link.query.auth.HapiFhirAuthenticationInterceptor

IPatientIdProvider - Interface in com.lantanagroup.link

IReportAggregator - Interface in com.lantanagroup.link

IReportGenerationDataEvent - Interface in com.lantanagroup.link

IReportGenerationEvent - Interface in com.lantanagroup.link

IReportSender - Interface in com.lantanagroup.link

isAllowQaEndpoints() - Method in class com.lantanagroup.link.config.api.ApiConfig

Allows use of QA debugging endpoints.

isAndOperator() - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

isApplySchemas() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.apply-schemas
Whether to apply schemas to the databases or not

isCompress() - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

oauth.compress
Whether to compress reports during submission

isEarlyExit() - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

isEarlyExit() - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

isEnabled() - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

isIncludeCensuses() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to include censuses in the submission bundle.

isIncludesQueryPlans() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to include the query plans used to generate the report in the submission bundle as a Binary resource entry.

isInverse() - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

isMergeCensuses() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to merge multiple censuses into a single list.

isNoScheduling() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.no-scheduling
When true, won't initialize the scheduling system.

isPromoteLineLevelResources() - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to move contained line-level resources to the top level of the submission bundle.

isRegenerate() - Method in class com.lantanagroup.link.model.GenerateRequest

isRequireAccessToken() - Method in class com.lantanagroup.link.model.BulkResponse

isRequireHttps() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.require-https
Indicates if HTTPS is required for submission urls.

isSkipQuery() - Method in class com.lantanagroup.link.config.api.ApiConfig

api.skip-query
Whether to skip the query phase of report generation; useful if patient data bundles have already been stored.

isUseBasicAuth() - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.useBasicAuth

isValidate() - Method in class com.lantanagroup.link.model.GenerateRequest

ITokenValidator - Interface in com.lantanagroup.link.auth

J

JSON - Enum constant in enum class com.lantanagroup.link.AzureBlobStorageSenderFormats

JSON - Enum constant in enum class com.lantanagroup.link.config.sender.FileSystemSenderConfig.Formats

L

LastMonth - Enum constant in enum class com.lantanagroup.link.ReportingPeriodMethods

LastWeek - Enum constant in enum class com.lantanagroup.link.ReportingPeriodMethods

LibraryTypeModelDefinitionCode - Static variable in class com.lantanagroup.link.Constants

LibraryTypeSystem - Static variable in class com.lantanagroup.link.Constants

LinkCredentials - Class in com.lantanagroup.link.auth

LinkCredentials() - Constructor for class com.lantanagroup.link.auth.LinkCredentials

LinkDevicePropertiesCodeSystem - Static variable in class com.lantanagroup.link.Constants

LinkDeviceVersionCodeSystem - Static variable in class com.lantanagroup.link.Constants

LinkOAuthConfig - Class in com.lantanagroup.link.config.auth

LinkOAuthConfig() - Constructor for class com.lantanagroup.link.config.auth.LinkOAuthConfig

loadAndRetrieveCategories() - Static method in class com.lantanagroup.link.ValidationCategorizer

loadFromResources() - Method in class com.lantanagroup.link.ValidationCategorizer

loadInitialData(Patient) - Method in class com.lantanagroup.link.query.uscore.PatientData

loadInitialPatientData(ReportCriteria, ReportContext, List<PatientOfInterestModel>) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

loadSupplementalData(String, Bundle) - Method in class com.lantanagroup.link.query.uscore.PatientData

loadSupplementalPatientData(ReportCriteria, ReportContext, List<PatientOfInterestModel>) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

loadToken(HttpServletRequest) - Method in class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

LogController - Class in com.lantanagroup.link.api.controller

LogController() - Constructor for class com.lantanagroup.link.api.controller.LogController

logger - Static variable in class com.lantanagroup.link.FhirBundler

logger - Static variable in class com.lantanagroup.link.GenericSender

logger - Static variable in class com.lantanagroup.link.query.uscore.PatientScoop

logger - Static variable in class com.lantanagroup.link.validation.Validator

LogMessage - Class in com.lantanagroup.link.model

LogMessage() - Constructor for class com.lantanagroup.link.model.LogMessage

LogMessage(Date, String, String, String) - Constructor for class com.lantanagroup.link.model.LogMessage

LogSearchResponse - Class in com.lantanagroup.link.model

LogSearchResponse() - Constructor for class com.lantanagroup.link.model.LogSearchResponse

M

main(String[]) - Static method in class com.lantanagroup.link.api.ApiApplication

Main entry point for SpringBoot application.

MainSystem - Static variable in class com.lantanagroup.link.Constants

mapRow(ResultSet, int) - Method in class com.lantanagroup.link.db.mappers.BaseMapper

maxRetry - Variable in class com.lantanagroup.link.config.api.ApiConfig

api.max-retry
The number of times the API should try to check that prerequisite services are available.

MeasureContext() - Constructor for class com.lantanagroup.link.model.ReportContext.MeasureContext

MeasureDefController - Class in com.lantanagroup.link.api.controller

MeasureDefController() - Constructor for class com.lantanagroup.link.api.controller.MeasureDefController

MeasureDefinition - Class in com.lantanagroup.link.db.model

MeasureDefinition() - Constructor for class com.lantanagroup.link.db.model.MeasureDefinition

MeasureEvaluator - Class in com.lantanagroup.link.api

MeasureImprovementNotationCodeSystem - Static variable in class com.lantanagroup.link.Constants

MeasurePackage - Class in com.lantanagroup.link.db.model

MeasurePackage() - Constructor for class com.lantanagroup.link.db.model.MeasurePackage

MeasurePackageController - Class in com.lantanagroup.link.api.controller

MeasurePackageController() - Constructor for class com.lantanagroup.link.api.controller.MeasurePackageController

MeasureScoringCodeSystem - Static variable in class com.lantanagroup.link.Constants

MeasureScoringExtension - Static variable in class com.lantanagroup.link.Constants

merge(PatientList) - Method in class com.lantanagroup.link.db.model.PatientList

mergePatientLists(ListResource, ListResource) - Static method in class com.lantanagroup.link.FhirHelper

Copies entries from list2 into list1 that are not already present in list1.

MetricController - Class in com.lantanagroup.link.api.controller

MetricController() - Constructor for class com.lantanagroup.link.api.controller.MetricController

MetricData - Class in com.lantanagroup.link.db.model

MetricData() - Constructor for class com.lantanagroup.link.db.model.MetricData

Metrics - Class in com.lantanagroup.link.db.model

Metrics() - Constructor for class com.lantanagroup.link.db.model.Metrics

MetricsReportResponse - Class in com.lantanagroup.link.model

MetricsReportResponse() - Constructor for class com.lantanagroup.link.model.MetricsReportResponse

module() - Method in class com.lantanagroup.link.api.ApiApplication

Responds with SimpleModule, which makes SpringBoot aware of FhirJsonSerializer, and uses it to serialize FHIR resources as XML or JSON in API responses.

MONTHLY_PERIOD - Static variable in class com.lantanagroup.link.Constants

N

NAME - Enum constant in enum class com.lantanagroup.link.model.TenantSummarySort

NationalProviderIdentifierSystemUrl - Static variable in class com.lantanagroup.link.Constants

NHSN_ORG_ID - Enum constant in enum class com.lantanagroup.link.model.TenantSummarySort

NOT_IMPORTANT - Enum constant in enum class com.lantanagroup.link.model.ValidationCategoryTypes

O

OAuth2Helper - Class in com.lantanagroup.link.auth

OAuth2Helper() - Constructor for class com.lantanagroup.link.auth.OAuth2Helper

OAuthTokenValidator - Class in com.lantanagroup.link.auth

OAuthTokenValidator() - Constructor for class com.lantanagroup.link.auth.OAuthTokenValidator

objectMapper - Static variable in class com.lantanagroup.link.db.mappers.BaseMapper

OnRegeneration - Enum constant in enum class com.lantanagroup.link.EventTypes

onRequest(IHttpRequest) - Method in class com.lantanagroup.link.query.uscore.QuerySaver

onStopped(Duration) - Method in class com.lantanagroup.link.time.Stopwatch

OperationOutcomeSeverityExtensionUrl - Static variable in class com.lantanagroup.link.Constants

OperationOutcomeTotalExtensionUrl - Static variable in class com.lantanagroup.link.Constants

OperationType - Enum Class in com.lantanagroup.link.config.query

OperationType - Enum Class in com.lantanagroup.link.db.model.tenant

OrganizationTypeSystem - Static variable in class com.lantanagroup.link.Constants

OriginalElementValueExtension - Static variable in class com.lantanagroup.link.Constants

OriginalResourceIdExtension - Static variable in class com.lantanagroup.link.Constants

P

paging(int) - Static method in class com.lantanagroup.link.StreamUtils

ParameterConfig - Class in com.lantanagroup.link.config.query

ParameterConfig - Class in com.lantanagroup.link.db.model.tenant

ParameterConfig() - Constructor for class com.lantanagroup.link.config.query.ParameterConfig

ParameterConfig() - Constructor for class com.lantanagroup.link.db.model.tenant.ParameterConfig

Parameters() - Constructor for class com.lantanagroup.link.db.mappers.BaseMapper.Parameters

parseFhirDate(String) - Static method in class com.lantanagroup.link.Helper

PatientData - Class in com.lantanagroup.link.db.model

PatientData - Class in com.lantanagroup.link.query.uscore

PatientData() - Constructor for class com.lantanagroup.link.db.model.PatientData

PatientData(StopwatchManager, TenantService, EventService, IGenericClient, ReportCriteria, ReportContext, FhirQuery) - Constructor for class com.lantanagroup.link.query.uscore.PatientData

PatientDataDelete - Enum constant in enum class com.lantanagroup.link.db.model.AuditTypes

Deletion of patient data as a result of retention check

PatientDataMapper - Class in com.lantanagroup.link.db.mappers

PatientDataMapper() - Constructor for class com.lantanagroup.link.db.mappers.PatientDataMapper

PatientDataRepository - Class in com.lantanagroup.link.db.repositories

PatientDataRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.PatientDataRepository

PatientDataResourceFilter - Class in com.lantanagroup.link.events

Filters out resources (MedicationRequest, ServiceRequest, Specimen, Condition) if the date of the resource is outside the reporting period

PatientDataResourceFilter() - Constructor for class com.lantanagroup.link.events.PatientDataResourceFilter

PatientId - Class in com.lantanagroup.link.db.model

PatientId() - Constructor for class com.lantanagroup.link.db.model.PatientId

PatientIdentifierController - Class in com.lantanagroup.link.api.controller

PatientIdentifierController() - Constructor for class com.lantanagroup.link.api.controller.PatientIdentifierController

PatientIdService - Class in com.lantanagroup.link

PatientIdService() - Constructor for class com.lantanagroup.link.PatientIdService

PatientList - Class in com.lantanagroup.link.db.model

PatientList() - Constructor for class com.lantanagroup.link.db.model.PatientList

PatientListDelete - Enum constant in enum class com.lantanagroup.link.db.model.AuditTypes

Deletion of patient lists as a result of retention check

PatientListMapper - Class in com.lantanagroup.link.db.mappers

PatientListMapper() - Constructor for class com.lantanagroup.link.db.mappers.PatientListMapper

PatientListRepository - Class in com.lantanagroup.link.db.repositories

PatientListRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.PatientListRepository

PatientMeasureReport - Class in com.lantanagroup.link.db.model

PatientMeasureReport() - Constructor for class com.lantanagroup.link.db.model.PatientMeasureReport

PatientMeasureReportMapper - Class in com.lantanagroup.link.db.mappers

PatientMeasureReportMapper() - Constructor for class com.lantanagroup.link.db.mappers.PatientMeasureReportMapper

PatientMeasureReportRepository - Class in com.lantanagroup.link.db.repositories

PatientMeasureReportRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

PatientOfInterestModel - Class in com.lantanagroup.link.model

PatientOfInterestModel() - Constructor for class com.lantanagroup.link.model.PatientOfInterestModel

PatientOfInterestModel(String, String) - Constructor for class com.lantanagroup.link.model.PatientOfInterestModel

PatientScoop - Class in com.lantanagroup.link.query.uscore

PatientScoop() - Constructor for class com.lantanagroup.link.query.uscore.PatientScoop

PatientsQueriedMetric - Class in com.lantanagroup.link.model

PatientsQueriedMetric() - Constructor for class com.lantanagroup.link.model.PatientsQueriedMetric

PatientsReportedMetric - Class in com.lantanagroup.link.model

PatientsReportedMetric() - Constructor for class com.lantanagroup.link.model.PatientsReportedMetric

PENDING - Static variable in class com.lantanagroup.link.db.model.BulkStatuses

PeriodDateFixer - Class in com.lantanagroup.link

PeriodDateFixer(Bundle) - Constructor for class com.lantanagroup.link.PeriodDateFixer

POTENTIAL_CONCERN - Enum constant in enum class com.lantanagroup.link.model.ValidationCategoryTypes

PreAuthTokenHeaderFilter - Class in com.lantanagroup.link.api.auth

PreAuthTokenHeaderFilter(String, ApiConfig, SharedService) - Constructor for class com.lantanagroup.link.api.auth.PreAuthTokenHeaderFilter

Q

QAController - Class in com.lantanagroup.link.api.controller

QAController() - Constructor for class com.lantanagroup.link.api.controller.QAController

QUARTERLY_PERIOD - Static variable in class com.lantanagroup.link.Constants

Query - Class in com.lantanagroup.link.db.model

Query - Class in com.lantanagroup.link.query.uscore

Query() - Constructor for class com.lantanagroup.link.db.model.Query

Query() - Constructor for class com.lantanagroup.link.query.uscore.Query

QueryList - Class in com.lantanagroup.link.db.model.tenant

QueryList() - Constructor for class com.lantanagroup.link.db.model.tenant.QueryList

QueryMapper - Class in com.lantanagroup.link.db.mappers

QueryMapper() - Constructor for class com.lantanagroup.link.db.mappers.QueryMapper

queryPatientList(String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

QueryPatientListTask - Class in com.lantanagroup.link.api.scheduling

QueryPatientListTask() - Constructor for class com.lantanagroup.link.api.scheduling.QueryPatientListTask

QueryPhase - Enum Class in com.lantanagroup.link.query

QueryPlan - Class in com.lantanagroup.link.config.query

QueryPlan - Class in com.lantanagroup.link.db.model.tenant

QueryPlan() - Constructor for class com.lantanagroup.link.config.query.QueryPlan

QueryPlan() - Constructor for class com.lantanagroup.link.db.model.tenant.QueryPlan

QueryRepository - Class in com.lantanagroup.link.db.repositories

QueryRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.QueryRepository

QuerySaver - Class in com.lantanagroup.link.query.uscore

QuerySaver(TenantService, String, String) - Constructor for class com.lantanagroup.link.query.uscore.QuerySaver

QueryTimeMetric - Class in com.lantanagroup.link.model

QueryTimeMetric() - Constructor for class com.lantanagroup.link.model.QueryTimeMetric

quoteApostrophe(String) - Static method in class com.lantanagroup.link.Helper

R

READ - Enum constant in enum class com.lantanagroup.link.config.query.OperationType

READ - Enum constant in enum class com.lantanagroup.link.db.model.tenant.OperationType

readInputStream(InputStream) - Static method in class com.lantanagroup.link.Helper

ReceivedDateExtensionUrl - Static variable in class com.lantanagroup.link.Constants

ReferencesConfig - Class in com.lantanagroup.link.config.query

ReferencesConfig - Class in com.lantanagroup.link.db.model.tenant

ReferencesConfig() - Constructor for class com.lantanagroup.link.config.query.ReferencesConfig

ReferencesConfig() - Constructor for class com.lantanagroup.link.db.model.tenant.ReferencesConfig

Report - Class in com.lantanagroup.link.db.model

Report() - Constructor for class com.lantanagroup.link.db.model.Report

ReportBase - Class in com.lantanagroup.link.model

ReportBase() - Constructor for class com.lantanagroup.link.model.ReportBase

ReportBundleProfileUrl - Static variable in class com.lantanagroup.link.Constants

ReportContext - Class in com.lantanagroup.link.model

ReportContext() - Constructor for class com.lantanagroup.link.model.ReportContext

ReportContext(HttpServletRequest, LinkCredentials) - Constructor for class com.lantanagroup.link.model.ReportContext

ReportContext.MeasureContext - Class in com.lantanagroup.link.model

ReportController - Class in com.lantanagroup.link.api.controller

ReportController() - Constructor for class com.lantanagroup.link.api.controller.ReportController

ReportCriteria - Class in com.lantanagroup.link.model

ReportCriteria(String, String, String) - Constructor for class com.lantanagroup.link.model.ReportCriteria

ReportCriteria(String, Collection<String>, String, String) - Constructor for class com.lantanagroup.link.model.ReportCriteria

ReportGenerator - Class in com.lantanagroup.link.api

This class creates a master measure report based on every individual report generated for each patient included in the "census" list..

ReportGenerator(SharedService, TenantService, StopwatchManager, ReportContext, ReportContext.MeasureContext, ReportCriteria, ApiConfig, IReportAggregator, Report) - Constructor for class com.lantanagroup.link.api.ReportGenerator

ReportIdHelper - Class in com.lantanagroup.link

ReportIdHelper() - Constructor for class com.lantanagroup.link.ReportIdHelper

ReportingPeriodCalculator - Class in com.lantanagroup.link

ReportingPeriodCalculator(ReportingPeriodMethods) - Constructor for class com.lantanagroup.link.ReportingPeriodCalculator

ReportingPeriodCalculator(ReportingPeriodMethods, TimeZone) - Constructor for class com.lantanagroup.link.ReportingPeriodCalculator

ReportingPeriodMethods - Enum Class in com.lantanagroup.link

ReportingPlan - Class in com.lantanagroup.link.db.model.tenant

ReportingPlan() - Constructor for class com.lantanagroup.link.db.model.tenant.ReportingPlan

ReportingPlan.SamsAuth - Class in com.lantanagroup.link.db.model.tenant

ReportMapper - Class in com.lantanagroup.link.db.mappers

ReportMapper() - Constructor for class com.lantanagroup.link.db.mappers.ReportMapper

ReportRepository - Class in com.lantanagroup.link.db.repositories

ReportRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.ReportRepository

ReportStatuses - Enum Class in com.lantanagroup.link.db.model

reset() - Method in class com.lantanagroup.link.time.StopwatchManager

reset(String) - Method in class com.lantanagroup.link.api.scheduling.Scheduler

ResourceIdChanger - Class in com.lantanagroup.link

retryWait - Variable in class com.lantanagroup.link.config.api.ApiConfig

api.retry-wait
The number of milliseconds the API should wait in between attempts at checking that prerequisite services are available.

Row(ResultSet) - Constructor for class com.lantanagroup.link.db.mappers.BaseMapper.Row

RuleBasedValidationCategory - Class in com.lantanagroup.link.validation

RuleBasedValidationCategory() - Constructor for class com.lantanagroup.link.validation.RuleBasedValidationCategory

RuleBasedValidationCategory(String, ValidationCategorySeverities, Boolean, ValidationCategoryTypes, String) - Constructor for class com.lantanagroup.link.validation.RuleBasedValidationCategory

run() - Method in class com.lantanagroup.link.api.bulk.BulkStatusFetchTask

run() - Method in class com.lantanagroup.link.api.bulk.InitiateBulkDataRequestTask

run() - Method in class com.lantanagroup.link.api.scheduling.DataRetentionCheckTask

run() - Method in class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

run() - Method in class com.lantanagroup.link.api.scheduling.QueryPatientListTask

S

SamsAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

SamsTokenResult - Class in com.lantanagroup.link.auth

SamsTokenResult() - Constructor for class com.lantanagroup.link.auth.SamsTokenResult

SamsTokenValidator - Class in com.lantanagroup.link.auth

SamsTokenValidator() - Constructor for class com.lantanagroup.link.auth.SamsTokenValidator

sanitizeHeader(String) - Static method in class com.lantanagroup.link.Helper

sanitizeString(String) - Static method in class com.lantanagroup.link.Helper

sanitizeUrl(String) - Static method in class com.lantanagroup.link.Helper

save(Aggregate) - Method in class com.lantanagroup.link.db.repositories.AggregateRepository

save(BulkStatus) - Method in class com.lantanagroup.link.db.repositories.BulkStatusRepository

save(BulkStatusResult) - Method in class com.lantanagroup.link.db.repositories.BulkStatusResultRepository

save(ConceptMap) - Method in class com.lantanagroup.link.db.repositories.ConceptMapRepository

save(PatientList) - Method in class com.lantanagroup.link.db.repositories.PatientListRepository

save(PatientMeasureReport) - Method in class com.lantanagroup.link.db.repositories.PatientMeasureReportRepository

save(Report) - Method in class com.lantanagroup.link.db.repositories.ReportRepository

save(Report, List<PatientList>) - Method in class com.lantanagroup.link.db.repositories.ReportRepository

saveAggregate(Aggregate) - Method in class com.lantanagroup.link.db.TenantService

saveAll(List<PatientData>) - Method in class com.lantanagroup.link.db.repositories.PatientDataRepository

saveAudit(Audit) - Method in class com.lantanagroup.link.db.SharedService

saveBulkStatus(BulkStatus) - Method in class com.lantanagroup.link.db.TenantService

saveBulkStatusResult(BulkStatusResult) - Method in class com.lantanagroup.link.db.TenantService

saveConceptMap(ConceptMap) - Method in class com.lantanagroup.link.db.TenantService

saveDataTraces(UUID, String, List<IBaseResource>) - Method in class com.lantanagroup.link.db.TenantService

saveFhirList(String, String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

saveMeasureDefinition(MeasureDefinition) - Method in class com.lantanagroup.link.db.SharedService

saveMeasurePackage(MeasurePackage) - Method in class com.lantanagroup.link.db.SharedService

saveMetrics(List<Metrics>) - Method in class com.lantanagroup.link.db.SharedService

savePatientData(List<PatientData>) - Method in class com.lantanagroup.link.db.TenantService

savePatientList(PatientList) - Method in class com.lantanagroup.link.db.TenantService

savePatientList(String, String, String, String, String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

savePatientMeasureReport(PatientMeasureReport) - Method in class com.lantanagroup.link.db.TenantService

saveQuery(Query) - Method in class com.lantanagroup.link.db.TenantService

saveReport(Report) - Method in class com.lantanagroup.link.db.TenantService

saveReport(Report, List<PatientList>) - Method in class com.lantanagroup.link.db.TenantService

saveTenantConfig(Tenant) - Method in class com.lantanagroup.link.db.SharedService

saveToken(CsrfToken, HttpServletRequest, HttpServletResponse) - Method in class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

saveUser(User) - Method in class com.lantanagroup.link.db.SharedService

Schedule - Class in com.lantanagroup.link.db.model.tenant

Schedule() - Constructor for class com.lantanagroup.link.db.model.tenant.Schedule

Scheduler - Class in com.lantanagroup.link.api.scheduling

Automatically invoked by spring boot during application start up.

Scheduler() - Constructor for class com.lantanagroup.link.api.scheduling.Scheduler

SEARCH - Enum constant in enum class com.lantanagroup.link.config.query.OperationType

SEARCH - Enum constant in enum class com.lantanagroup.link.db.model.tenant.OperationType

searchConceptMap(String) - Method in class com.lantanagroup.link.api.controller.ConceptMapController

searchConceptMaps() - Method in class com.lantanagroup.link.db.TenantService

searchMeasureDefinitions() - Method in class com.lantanagroup.link.api.controller.MeasureDefController

searchMeasurePackages() - Method in class com.lantanagroup.link.api.controller.MeasurePackageController

searchPatientLists(String) - Method in class com.lantanagroup.link.api.controller.PatientIdentifierController

searchReports() - Method in class com.lantanagroup.link.db.TenantService

searchReports(String) - Method in class com.lantanagroup.link.api.controller.ReportController

SearchTenantResponse - Class in com.lantanagroup.link.model

SearchTenantResponse(String, String, String, String) - Constructor for class com.lantanagroup.link.model.SearchTenantResponse

searchTenants() - Method in class com.lantanagroup.link.api.controller.TenantController

searchTenantSummaries(String, String, int, boolean) - Method in class com.lantanagroup.link.api.controller.TenantController

searchUsers(boolean) - Method in class com.lantanagroup.link.api.controller.UserController

searchUsers(boolean) - Method in class com.lantanagroup.link.db.SharedService

send(LinkCredentials, String, String, boolean, HttpServletRequest) - Method in class com.lantanagroup.link.api.controller.ReportController

Sends the specified report to the recipients configured in api.send-urls

send(TenantService, Bundle, Report, HttpServletRequest, LinkCredentials) - Method in interface com.lantanagroup.link.IReportSender

sendContent(Resource, Report) - Method in class com.lantanagroup.link.GenericSender

serialize(T, JsonGenerator, SerializerProvider) - Method in class com.lantanagroup.link.serialize.FhirJsonSerializer

setAcceptable(Boolean) - Method in class com.lantanagroup.link.model.ValidationCategory

setAddress(Address) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The address of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

setAddress(String) - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.address
This issuer is connection string used to connect to an azure blog storage endpoint

setAddressLine(String) - Method in class com.lantanagroup.link.db.model.tenant.Address

setAfterApplyConceptMaps(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterBundling(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterMeasureEval(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterMeasureResolution(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterPatientDataQuery(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterPatientDataStore(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterPatientOfInterestLookup(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterPatientResourceQuery(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAfterReportStore(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setAlgorithm(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.algorithm
The algorithm used by the identity provider to sign the jwt token

setAllowedCredentials(Boolean) - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-credentials
True or false to allow credentials in CORS.

setAllowedHeaders(String) - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-headers
Space-separated list of allowed headers.

setAllowedMethods(String[]) - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-methods
An array of strings representing which methods (ex: GET, PUT, POST) are allowed in CORS requests

setAllowedOrigins(String) - Method in class com.lantanagroup.link.config.api.CorsConfig

api.cors.allowed-origins
Space-separated list of allowed origins.

setAllowQaEndpoints(boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

Allows use of QA debugging endpoints.

setAndOperator(boolean) - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

setApikey(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

setApplicationContext(ApplicationContext) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

setApplicationContext(ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

setApplicationContext(ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.Query

setApplyConceptMaps(ApplyConceptMaps) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setApplySchemas(boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.apply-schemas
Whether to apply schemas to the databases or not

setAudience(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

setAuthClass(String) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

The class that should be used (if any) to authenticate queries to the EHR's FHIR server.

setAuthConfig(LinkOAuthConfig) - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

sender.fhir.auth-config

setAuthJwksUrl(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.auth-jwks-url
The url endpoint for certs from the identity provider, which is used to verify any JSON Web Token (JWT)

setAuthUrl(String) - Method in class com.lantanagroup.link.config.SwaggerConfig

setAverage(double) - Method in class com.lantanagroup.link.model.EvaluationMetric

setAverage(double) - Method in class com.lantanagroup.link.model.QueryTimeMetric

setAverage(double) - Method in class com.lantanagroup.link.model.ValidationMetric

setAzureAuth(AzureAuth) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by AzureAuth implementation

setAzureStorageContainerName(String) - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.azure-storage-container-name
This is the name of the azure blog storage container

setBaseDate(Date) - Method in class com.lantanagroup.link.ReportingPeriodCalculator

setBasicAuth(BasicAuth) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by BasicAuth implementation

setBasicAuthAndApiKey(BasicAuthAndApiKey) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by BasicAuthAndApiKeyHeader implementation

setBeforeBundling(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforeMeasureEval(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforeMeasureResolution(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforePatientDataQuery(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforePatientDataStore(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforePatientOfInterestLookup(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBeforeReportStore(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setBody(String) - Method in class com.lantanagroup.link.db.model.Query

setBoolean(String, Boolean) - Method in class com.lantanagroup.link.db.SQLCSHelper

setBuild(String) - Method in class com.lantanagroup.link.model.ApiVersionModel

setBulkDataCron(String) - Method in class com.lantanagroup.link.db.model.tenant.Schedule

setBulkDataFollowUpCron(String) - Method in class com.lantanagroup.link.db.model.tenant.Schedule

setBulkGroupId(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

setBulkInitiateResponseUrlHeader(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Header name to retrieve polling url

setBulkWaitTimeInMilliseconds(int) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

value that indicates the sleep time when looping retries for progress completion

setBundle(Bundle) - Method in class com.lantanagroup.link.db.model.MeasureDefinition

setBundleId(String) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setBundleIds(List<String>) - Method in class com.lantanagroup.link.model.GenerateRequest

setBundleType(Bundle.BundleType) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The type of submission bundle to create.

setBundling(Bundling) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration properties for how to bundle the final submission, including contact information that is used when creating an Organization resource that represents the sending facility (the tenant).

setBytes(String, byte[]) - Method in class com.lantanagroup.link.db.SQLCSHelper

setCaller(String) - Method in class com.lantanagroup.link.model.LogMessage

setCategories(List<RuleBasedValidationCategory>) - Method in class com.lantanagroup.link.ValidationCategorizer

setCategory(String) - Method in class com.lantanagroup.link.db.model.Metrics

setCategoryCode(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

setCdcOrgId(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Organization ID for the tenant according to CDC.

setCdcOrgId(String) - Method in class com.lantanagroup.link.model.GlobalReportResponse

setCdcOrgId(String) - Method in class com.lantanagroup.link.model.SearchTenantResponse

setCernerAuth(CernerAuth) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by CernerAuth implementation

setCheckIpAddress(Boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.check-ip-address
Check if the IP address in the jwt token matches the ip address of the request

setCity(String) - Method in class com.lantanagroup.link.db.model.tenant.Address

setClient(HttpClient) - Method in class com.lantanagroup.link.query.auth.EpicAuth

setClientId(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.clientId

setClientId(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

setClientId(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

setClientId(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

setClientId(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setClientSecret(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.clientSecret

setClientSecret(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setCode(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setCommit(String) - Method in class com.lantanagroup.link.model.ApiVersionModel

setCompress(boolean) - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

oauth.compress
Whether to compress reports during submission

setConceptMap(ConceptMap) - Method in class com.lantanagroup.link.db.model.ConceptMap

setConfig(ApiConfig) - Method in class com.lantanagroup.link.api.controller.BaseController

setConnectionString(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.connection-string
The connection string to use for tenant-agnostic data

setConnectionString(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The connection string to use for tenant-specific data.

setContext(ApplicationContext) - Method in class com.lantanagroup.link.api.controller.ReportController

setContext(ApplicationContext) - Method in class com.lantanagroup.link.EventService

setContext(ApplicationContext) - Method in class com.lantanagroup.link.PatientIdService

setContext(ApplicationContext) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setContexts(List<String>) - Method in class com.lantanagroup.link.db.model.ConceptMap

setCookieHttpOnly(boolean) - Method in class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

setCors(CorsConfig) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.cors
CORS configuration used for browser interaction with the API

setCount(long) - Method in class com.lantanagroup.link.model.ValidationCategoryResponse

setCountry(String) - Method in class com.lantanagroup.link.db.model.tenant.Address

setCqfVersion(String) - Method in class com.lantanagroup.link.model.ApiVersionModel

setCredentialMode(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.credential-mode Either "client", "password", or "sams-password"

setCron(String) - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The CRON-formatted schedule to use for this report's generation and submission

setCtx(FhirContext) - Method in class com.lantanagroup.link.api.controller.BaseController

setData(MetricData) - Method in class com.lantanagroup.link.db.model.Metrics

setDataRetentionCheckCron(String) - Method in class com.lantanagroup.link.db.model.tenant.Schedule

The CRON-formatted schedule to use for data retention checks (removing data that is outside the tenant's configured retention period).

setDataTraceId(UUID) - Method in class com.lantanagroup.link.db.model.PatientData

setDate(Date) - Method in class com.lantanagroup.link.db.model.BulkStatus

setDateTime(String, Long) - Method in class com.lantanagroup.link.db.SQLCSHelper

setDescription(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

A description of the tenant that is more meaningful/useful than the id.

setDetails(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setDeviceInfo(Device) - Method in class com.lantanagroup.link.model.ReportBase

setEarlyExit(boolean) - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

setEarlyExit(boolean) - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

setEmail(String) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The email of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

setEmail(String) - Method in class com.lantanagroup.link.db.model.User

setEmailAddress(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setEnabled(boolean) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

setEnabled(Boolean) - Method in class com.lantanagroup.link.db.model.User

setEncryptSecret(String) - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

setEpicAuth(EpicAuth) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by EpicAuth implementation

setEvaluation(EvaluationMetric) - Method in class com.lantanagroup.link.model.MetricsReportResponse

setEvaluationService(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

evaluation-service
The measure evaluation service (CQF-Ruler) installation that is to be used to evaluate patient data against measure logic.

setEvents(Events) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Custom classes/functionality that can be turned on at various points during the report generation pipeline.

setEventService(EventService) - Method in class com.lantanagroup.link.api.controller.ReportController

setEventService(EventService) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setExecutorService(ExecutorService) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

setExecutorService(ExecutorService) - Method in class com.lantanagroup.link.api.controller.BulkController

setExecutorService(ExecutorService) - Method in class com.lantanagroup.link.api.controller.QAController

setExpression(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setFhirQuery(FhirQuery) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration to use when querying patients of interest for their clinical data, such as Encounter, Condition, etc.

setFhirQueryClient(IGenericClient) - Method in class com.lantanagroup.link.query.uscore.BulkQuery

setFhirQueryClient(IGenericClient) - Method in class com.lantanagroup.link.query.uscore.Query

setFhirQueryServer(IGenericClient) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setFhirSenderConfig(FHIRSenderConfig) - Method in class com.lantanagroup.link.GenericSender

setFhirServerBase(String) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

setFhirServerBase(String) - Method in class com.lantanagroup.link.db.model.tenant.QueryList

setField(ValidationCategoryRule.Field) - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

setFormat(AzureBlobStorageSenderFormats) - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.format
This is the format used to send to an azure blog storage endpoint

setFormat(FileSystemSenderConfig.Formats) - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

setFormat(String) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setFormat(String) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setGenerateAndSubmitReports(List<GenerateReport>) - Method in class com.lantanagroup.link.db.model.tenant.Schedule

Configuration for when to automatically generate and submit reports.

setGeneratedTime(Date) - Method in class com.lantanagroup.link.db.model.Report

setGuidance(String) - Method in class com.lantanagroup.link.model.ValidationCategory

setHistory(double[]) - Method in class com.lantanagroup.link.model.EvaluationMetric

setHistory(double[]) - Method in class com.lantanagroup.link.model.QueryTimeMetric

setHistory(double[]) - Method in class com.lantanagroup.link.model.ValidationMetric

setHistory(long[]) - Method in class com.lantanagroup.link.model.PatientsQueriedMetric

setHistory(long[]) - Method in class com.lantanagroup.link.model.PatientsReportedMetric

setId(String) - Method in class com.lantanagroup.link.db.model.Aggregate

setId(String) - Method in class com.lantanagroup.link.db.model.ConceptMap

setId(String) - Method in class com.lantanagroup.link.db.model.MeasureDefinition

setId(String) - Method in class com.lantanagroup.link.db.model.MeasurePackage

setId(String) - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

setId(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

A unique ID of the tenant.

setId(String) - Method in class com.lantanagroup.link.model.PatientOfInterestModel

setId(String) - Method in class com.lantanagroup.link.model.ReportBase

setId(String) - Method in class com.lantanagroup.link.model.SearchTenantResponse

setId(String) - Method in class com.lantanagroup.link.model.TenantSummary

setId(String) - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

setId(String) - Method in class com.lantanagroup.link.model.ValidationCategory

setId(UUID) - Method in class com.lantanagroup.link.db.model.Audit

setId(UUID) - Method in class com.lantanagroup.link.db.model.BulkStatus

setId(UUID) - Method in class com.lantanagroup.link.db.model.BulkStatusResult

setId(UUID) - Method in class com.lantanagroup.link.db.model.DataTrace

setId(UUID) - Method in class com.lantanagroup.link.db.model.Metrics

setId(UUID) - Method in class com.lantanagroup.link.db.model.PatientData

setId(UUID) - Method in class com.lantanagroup.link.db.model.PatientList

setId(UUID) - Method in class com.lantanagroup.link.db.model.Query

setId(UUID) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setId(UUID) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

setId(UUID) - Method in class com.lantanagroup.link.db.model.User

setId(IBaseResource, UUID) - Static method in class com.lantanagroup.link.db.model.DataTrace

setIdentifier(String) - Method in class com.lantanagroup.link.db.model.PatientId

setIdentifier(String) - Method in class com.lantanagroup.link.model.PatientOfInterestModel

setIds(String) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setIds(String) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setIncludeCensuses(boolean) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to include censuses in the submission bundle.

setIncludesQueryPlans(boolean) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to include the query plans used to generate the report in the submission bundle as a Binary resource entry.

setInfoGroups(List<ApiInfoGroup>) - Method in class com.lantanagroup.link.config.api.ApiConfig

setInitial(List<TypedQueryPlan>) - Method in class com.lantanagroup.link.config.query.QueryPlan

setInitial(List<TypedQueryPlan>) - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

setInverse(boolean) - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

setIssuer(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.issuer
This issuer is used during token validation to ensure that the JWT has been issued by a trusted system

setJwt(DecodedJWT) - Method in class com.lantanagroup.link.auth.LinkCredentials

setKey(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

setLastSubmissionDate(String) - Method in class com.lantanagroup.link.model.TenantSummary

setLastSubmissionId(String) - Method in class com.lantanagroup.link.model.TenantSummary

setLastUpdated(Date) - Method in class com.lantanagroup.link.db.model.MeasureDefinition

setLastUpdated(Date) - Method in class com.lantanagroup.link.db.model.PatientList

setLinks(List<ApiInfoGroupSectionLink>) - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSection

setListId(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.EhrPatientList

setLists(List<EhrPatientList>) - Method in class com.lantanagroup.link.db.model.tenant.QueryList

setLiteral(String) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setLiteral(String) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setLongName(String) - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

setLookback(String) - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

setLookback(Period) - Method in class com.lantanagroup.link.config.query.QueryPlan

setMasterIdentifierValue(String) - Method in class com.lantanagroup.link.model.ReportContext

setMaxRetry(Integer) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.max-retry
The number of times the API should try to check that prerequisite services are available.

setMeasure(Measure) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setMeasureContexts(List<ReportContext.MeasureContext>) - Method in class com.lantanagroup.link.model.ReportContext

setMeasureDefUrls(HashMap<String, String>) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.measure-def-urls
A set of URLs representing the latest measure definition, keyed by measure ID

setMeasureEvaluationThreads(Integer) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.measure-evaluation-threads
The number of threads to use for patient measure report generation.

setMeasureId(String) - Method in class com.lantanagroup.link.db.model.Aggregate

setMeasureId(String) - Method in class com.lantanagroup.link.db.model.MeasureDefinition

setMeasureId(String) - Method in class com.lantanagroup.link.db.model.PatientList

setMeasureId(String) - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

setMeasureId(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.EhrPatientList

setMeasureIds(List<String>) - Method in class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

setMeasureIds(List<String>) - Method in class com.lantanagroup.link.db.model.MeasurePackage

setMeasureIds(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The IDs of the measures to generate the report for

setMeasureIds(List<String>) - Method in class com.lantanagroup.link.model.ReportBase

setMeasureReport(MeasureReport) - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

setMeasureReport(MeasureReport) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setMeasures(List<TenantSummaryMeasure>) - Method in class com.lantanagroup.link.model.TenantSummary

setMergeCensuses(boolean) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to merge multiple censuses into a single list.

setMessage(String) - Method in class com.lantanagroup.link.model.LogMessage

setMessage(String) - Method in class com.lantanagroup.link.model.TestResponse

setMessages(List<LogMessage>) - Method in class com.lantanagroup.link.model.LogSearchResponse

setName(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.name
The name of the application that's returned in Device instances of reports

setName(String) - Method in class com.lantanagroup.link.config.api.ApiInfoGroup

setName(String) - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSection

setName(String) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setName(String) - Method in class com.lantanagroup.link.db.model.Audit

setName(String) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The name of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

setName(String) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setName(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The name of the tenant, such as the facility's name.

setName(String) - Method in class com.lantanagroup.link.db.model.User

setName(String) - Method in class com.lantanagroup.link.model.SearchTenantResponse

setName(String) - Method in class com.lantanagroup.link.model.TenantSummary

setNetwork(String) - Method in class com.lantanagroup.link.db.model.Audit

setNhsnOrgId(String) - Method in class com.lantanagroup.link.model.TenantSummary

setNoScheduling(boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.no-scheduling
When true, won't initialize the scheduling system.

setNotes(String) - Method in class com.lantanagroup.link.db.model.Audit

setNpi(String) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The National Provider Identifier (NPI) of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.identifier field

setNString(String, String) - Method in class com.lantanagroup.link.db.SQLCSHelper

setOnRegeneration(List<String>) - Method in class com.lantanagroup.link.db.model.tenant.Events

setOperationType(OperationType) - Method in class com.lantanagroup.link.config.query.ReferencesConfig

setOperationType(OperationType) - Method in class com.lantanagroup.link.db.model.tenant.ReferencesConfig

setOriginalResource(String) - Method in class com.lantanagroup.link.db.model.DataTrace

setOutput(List<BulkOutput>) - Method in class com.lantanagroup.link.model.BulkResponse

setPackageId(String) - Method in class com.lantanagroup.link.model.GenerateRequest

setPaged(int) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setPaged(int) - Method in class com.lantanagroup.link.config.query.ReferencesConfig

setPaged(int) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setPaged(int) - Method in class com.lantanagroup.link.db.model.tenant.ReferencesConfig

setParallelPatients(int) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

The number of patients to query for in parallel using separate threads.

setParameters(List<ParameterConfig>) - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

setParameters(List<ParameterConfig>) - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

setPassword(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.password

setPassword(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuth

setPassword(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

setPassword(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setPasswordHash(String) - Method in class com.lantanagroup.link.db.model.User

setPasswordSalt(byte[]) - Method in class com.lantanagroup.link.db.model.User

setPath(String) - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

setPatientId(String) - Method in class com.lantanagroup.link.db.model.DataTrace

setPatientId(String) - Method in class com.lantanagroup.link.db.model.PatientData

setPatientId(String) - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

setPatientIdResolver(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.patient-id-resolver
The class used to determine the list of patient ids that should be queried for

setPatientLists(List<PatientList>) - Method in class com.lantanagroup.link.model.ReportContext

setPatientReportsByPatientId(Map<String, MeasureReport>) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setPatients(List<PatientId>) - Method in class com.lantanagroup.link.db.model.PatientList

setPatientsOfInterest(List<PatientOfInterestModel>) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setPatientsOfInterest(List<PatientOfInterestModel>) - Method in class com.lantanagroup.link.model.ReportContext

setPatientsQueried(PatientsQueriedMetric) - Method in class com.lantanagroup.link.model.MetricsReportResponse

setPatientsReported(PatientsReportedMetric) - Method in class com.lantanagroup.link.model.MetricsReportResponse

setPattern(Pattern) - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

setPeriodEnd(String) - Method in class com.lantanagroup.link.db.model.PatientList

setPeriodEnd(String) - Method in class com.lantanagroup.link.model.GenerateRequest

setPeriodEnd(String) - Method in class com.lantanagroup.link.model.ReportBase

setPeriodStart(String) - Method in class com.lantanagroup.link.db.model.PatientList

setPeriodStart(String) - Method in class com.lantanagroup.link.model.GenerateRequest

setPeriodStart(String) - Method in class com.lantanagroup.link.model.ReportBase

setPhone(String) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

The phone of the organization/facility the system is bundling/submitting for, to be used in the submission Bundle's Organization.name field

setPlanNames(Map<String, String>) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

setPosition(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setPostalCode(String) - Method in class com.lantanagroup.link.db.model.tenant.Address

setPretty(Boolean) - Method in class com.lantanagroup.link.config.sender.FileSystemSenderConfig

setProgressHeaderCompleteValue(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

value that indicates bulk export is ready to retrieve

setProgressHeaderName(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Header name for progress status.

setPromoteLineLevelResources(boolean) - Method in class com.lantanagroup.link.db.model.tenant.Bundling

Whether to move contained line-level resources to the top level of the submission bundle.

setPublicAddress(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.public-address
The public endpoint address for the API (i.e.

setQueryId(UUID) - Method in class com.lantanagroup.link.db.model.DataTrace

setQueryList(QueryList) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration that should be used for /api/{tenantId}/poi/$query-list to query the EHR's FHIR List for patients of interest

setQueryPatientListCron(String) - Method in class com.lantanagroup.link.db.model.tenant.Schedule

The CRON-formatted schedule to use querying patient list information from the EHR.

setQueryPlan(QueryPlan) - Method in class com.lantanagroup.link.model.ReportContext

setQueryPlans(Map<String, QueryPlan>) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

setQueryTime(QueryTimeMetric) - Method in class com.lantanagroup.link.model.MetricsReportResponse

setQueryType(String) - Method in class com.lantanagroup.link.db.model.Query

setReason(String) - Method in class com.lantanagroup.link.auth.SamsTokenResult

setReference(String) - Method in class com.lantanagroup.link.db.model.PatientId

setReference(String) - Method in class com.lantanagroup.link.model.PatientOfInterestModel

setReferences(ReferencesConfig) - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

setReferences(ReferencesConfig) - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

setRegenerate(boolean) - Method in class com.lantanagroup.link.model.GenerateRequest

setRegenerateIfExists(Boolean) - Method in class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

setRegenerateIfExists(Boolean) - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

If a report already exists for the calculated reporting period and measures, indicates whether or not the report generation process should continue and overwrite the already existing report.

setRegex(String) - Method in class com.lantanagroup.link.validation.ValidationCategoryRule

setRelativeBulkUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

ex /R4/Group/{groupId}/$export?_type=patient,medicationrequest,medication

setReport(MeasureReport) - Method in class com.lantanagroup.link.db.model.Aggregate

setReportAggregator(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

setReportDefBundle(Bundle) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setReportId(String) - Method in class com.lantanagroup.link.db.model.Aggregate

setReportId(String) - Method in class com.lantanagroup.link.db.model.Metrics

setReportId(String) - Method in class com.lantanagroup.link.db.model.PatientMeasureReport

setReportId(String) - Method in class com.lantanagroup.link.db.model.Query

setReportId(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setReportId(String) - Method in class com.lantanagroup.link.model.ReportContext.MeasureContext

setReportingPeriodMethod(ReportingPeriodMethods) - Method in class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

setReportingPeriodMethod(ReportingPeriodMethods) - Method in class com.lantanagroup.link.db.model.tenant.GenerateReport

The method that should be used to calculate the reporting period for the report.

setReportingPlan(ReportingPlan) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Configuration for how to query the MRP (reporting plan) interface at CDC/NHSN to determine if a facility/tenant is signed up to report during the calculated reporting period.

setRequest(String) - Method in class com.lantanagroup.link.model.BulkResponse

setRequest(HttpServletRequest) - Method in class com.lantanagroup.link.model.ReportContext

setRequireAccessToken(boolean) - Method in class com.lantanagroup.link.model.BulkResponse

setRequireHttps(boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.require-https
Indicates if HTTPS is required for submission urls.

setResource(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

setResource(IBaseResource) - Method in class com.lantanagroup.link.db.model.PatientData

setResourceId(String) - Method in class com.lantanagroup.link.db.model.DataTrace

setResourceId(String) - Method in class com.lantanagroup.link.db.model.PatientData

setResourceType(String) - Method in class com.lantanagroup.link.config.query.TypedQueryPlan

setResourceType(String) - Method in class com.lantanagroup.link.db.model.DataTrace

setResourceType(String) - Method in class com.lantanagroup.link.db.model.PatientData

setResourceType(String) - Method in class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

setResult(BulkResponse) - Method in class com.lantanagroup.link.db.model.BulkStatusResult

setRetentionPeriod(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

ISO 8601 formatted duration in which to keep data for each tenant.

setRetentionPeriod(String) - Method in class com.lantanagroup.link.model.SearchTenantResponse

setRetrieved(Date) - Method in class com.lantanagroup.link.db.model.PatientData

setRetrieved(Date) - Method in class com.lantanagroup.link.db.model.Query

setRetryWait(int) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.retry-wait
The number of milliseconds the API should wait in between attempts at checking that prerequisite services are available.

setRules(List<ValidationCategoryRule>) - Method in class com.lantanagroup.link.validation.ValidationCategoryRuleSet

setRuleSets(List<ValidationCategoryRuleSet>) - Method in class com.lantanagroup.link.validation.RuleBasedValidationCategory

setSamsAuth(ReportingPlan.SamsAuth) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

setScheduling(Schedule) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

Schedule configuration for the tenant that can be used to automatically begin processes such as querying for patient lists, data retention, and automatic generation and submission of reports.

setScope(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.scope

setScope(String[]) - Method in class com.lantanagroup.link.config.SwaggerConfig

setScopes(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

setSecret(String) - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.secret
This issued sas token is for access to the azure blog storage container

setSecret(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

setSecret(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

setSections(List<ApiInfoGroupSection>) - Method in class com.lantanagroup.link.config.api.ApiInfoGroup

setSecure(Boolean) - Method in class com.lantanagroup.link.api.auth.CustomCsrfTokenRepository

setSender(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.sender
The class used to send reports

setServiceId(String) - Method in class com.lantanagroup.link.config.sender.AzureBlobStorageConfig

sender.abs.serviceId
This is the azure blog storage service Id

setSeverity(ValidationCategorySeverities) - Method in class com.lantanagroup.link.model.ValidationCategory

setSeverity(String) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResult

setSeverity(String) - Method in class com.lantanagroup.link.model.LogMessage

setSharedService(SharedService) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

setSharedService(SharedService) - Method in class com.lantanagroup.link.validation.Validator

setShortName(String) - Method in class com.lantanagroup.link.model.TenantSummaryMeasure

setShouldPersist(Boolean) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setSkipInit(Boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.skip-init
If true, init processes (loading measure bundles and resources into the internal FHIR server) should be skipped

setSkipQuery(boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.skip-query
Whether to skip the query phase of report generation; useful if patient data bundles have already been stored.

setSocketTimeout(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

setState(String) - Method in class com.lantanagroup.link.db.model.tenant.Address

setStatus(ReportStatuses) - Method in class com.lantanagroup.link.db.model.Report

setStatus(String) - Method in class com.lantanagroup.link.auth.SamsTokenResult

setStatus(String) - Method in class com.lantanagroup.link.db.model.BulkStatus

setStatusId(UUID) - Method in class com.lantanagroup.link.db.model.BulkStatusResult

setStatusUrl(String) - Method in class com.lantanagroup.link.db.model.BulkStatus

setStopwatchManager(StopwatchManager) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setString(String, String) - Method in class com.lantanagroup.link.db.SQLCSHelper

setSubmittedTime(Date) - Method in class com.lantanagroup.link.db.model.Report

setSuccess(Boolean) - Method in class com.lantanagroup.link.model.TestResponse

setSupplemental(List<TypedQueryPlan>) - Method in class com.lantanagroup.link.config.query.QueryPlan

setSupplemental(List<TypedQueryPlan>) - Method in class com.lantanagroup.link.db.model.tenant.QueryPlan

setTaskName(String) - Method in class com.lantanagroup.link.db.model.Metrics

setTenantConfig(Tenant) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

setTenantId(String) - Method in class com.lantanagroup.link.api.bulk.BulkStatusFetchTask

setTenantId(String) - Method in class com.lantanagroup.link.api.bulk.InitiateBulkDataRequestTask

setTenantId(String) - Method in class com.lantanagroup.link.api.scheduling.DataRetentionCheckTask

setTenantId(String) - Method in class com.lantanagroup.link.api.scheduling.GenerateAndSubmitReportTask

setTenantId(String) - Method in class com.lantanagroup.link.api.scheduling.QueryPatientListTask

setTenantId(String) - Method in class com.lantanagroup.link.db.model.Audit

setTenantId(String) - Method in class com.lantanagroup.link.db.model.Metrics

setTenantId(String) - Method in class com.lantanagroup.link.model.GlobalReportResponse

setTenantName(String) - Method in class com.lantanagroup.link.model.GlobalReportResponse

setTenants(List<TenantSummary>) - Method in class com.lantanagroup.link.model.TenantSummaryResponse

setTenantService(TenantService) - Method in class com.lantanagroup.link.api.bulk.BulkManagerService

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.AzureAuth

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.BasicAuth

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.BasicAuthAndApiKeyHeader

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.CernerAuth

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.EpicAuth

setTenantService(TenantService) - Method in interface com.lantanagroup.link.query.auth.ICustomAuth

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.auth.TokenAuth

setTenantService(TenantService) - Method in class com.lantanagroup.link.query.uscore.PatientScoop

setTerminologyService(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.terminology-service
The FHIR terminology service to use for storing ValueSet and CodeSystem resources, passed to the evaluation-service for use during measure evaluation.

setTimestamp(Date) - Method in class com.lantanagroup.link.db.model.Audit

setTimestamp(Date) - Method in class com.lantanagroup.link.db.model.Metrics

setTimestamp(Date) - Method in class com.lantanagroup.link.model.LogMessage

setTimeZone(TimeZone) - Method in class com.lantanagroup.link.ReportingPeriodCalculator

setTimeZoneId(String) - Method in class com.lantanagroup.link.db.model.tenant.Tenant

The Time Zone string for the Tenant

setTitle(String) - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSectionLink

setTitle(String) - Method in class com.lantanagroup.link.model.ValidationCategory

setToken(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.TokenAuth

setTokenAuth(TokenAuth) - Method in class com.lantanagroup.link.db.model.tenant.FhirQuery

Configuration used by TokenAuth implementation

setTokenUrl(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.tokenUrl

setTokenUrl(String) - Method in class com.lantanagroup.link.config.SwaggerConfig

setTokenUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.AzureAuth

setTokenUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.CernerAuth

setTokenUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.EpicAuth

setTokenUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setTokenValidationEndpoint(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.tokenValidationEndpoint
The url for the identity provider's token validation endpoint

setTokenVerificationClass(String) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.tokenVerificationClass
The class configured to verify a jwt token in the api

setTotal(int) - Method in class com.lantanagroup.link.model.LogSearchResponse

setTotal(int) - Method in class com.lantanagroup.link.model.TenantSummaryResponse

setTotal(long) - Method in class com.lantanagroup.link.model.PatientsQueriedMetric

setTotal(long) - Method in class com.lantanagroup.link.model.PatientsReportedMetric

setTransactionTime(String) - Method in class com.lantanagroup.link.model.BulkResponse

setType(AuditTypes) - Method in class com.lantanagroup.link.db.model.Audit

setType(ValidationCategoryTypes) - Method in class com.lantanagroup.link.model.ValidationCategory

setType(String) - Method in class com.lantanagroup.link.model.BulkOutput

setUrl(String) - Method in class com.lantanagroup.link.config.api.ApiInfoGroupSectionLink

setUrl(String) - Method in class com.lantanagroup.link.config.sender.FHIRSenderConfig

sender.fhir.url

setUrl(String) - Method in class com.lantanagroup.link.db.model.Query

setUrl(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan

setUrl(String) - Method in class com.lantanagroup.link.model.BulkOutput

setUseBasicAuth(boolean) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.useBasicAuth

setUser(LinkCredentials) - Method in class com.lantanagroup.link.model.ReportContext

setUser(User) - Method in class com.lantanagroup.link.auth.LinkCredentials

setUserId(UUID) - Method in class com.lantanagroup.link.db.model.Audit

setUsername(String) - Method in class com.lantanagroup.link.config.auth.LinkOAuthConfig

oauth.username

setUsername(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuth

setUsername(String) - Method in class com.lantanagroup.link.db.model.tenant.auth.BasicAuthAndApiKey

setUsername(String) - Method in class com.lantanagroup.link.db.model.tenant.ReportingPlan.SamsAuth

setUUID(String, UUID) - Method in class com.lantanagroup.link.db.SQLCSHelper

setValidate(boolean) - Method in class com.lantanagroup.link.model.GenerateRequest

setValidateFhirServer(Boolean) - Method in class com.lantanagroup.link.config.api.ApiConfig

api.validate-fhir-server
Boolean for whether to check for metadata before request or not

setValidation(ValidationMetric) - Method in class com.lantanagroup.link.model.MetricsReportResponse

setValidationResultId(UUID) - Method in class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

setVariable(String) - Method in class com.lantanagroup.link.config.query.ParameterConfig

setVariable(String) - Method in class com.lantanagroup.link.db.model.tenant.ParameterConfig

setVersion(String) - Method in class com.lantanagroup.link.db.model.Report

setVersion(String) - Method in class com.lantanagroup.link.model.ApiVersionModel

SEVERITIES - Static variable in class com.lantanagroup.link.model.LogMessage

SEVERITY - Enum constant in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

SharedService - Class in com.lantanagroup.link.db

SharedService() - Constructor for class com.lantanagroup.link.db.SharedService

shouldRemove(ReportCriteria, Duration, Resource) - Static method in class com.lantanagroup.link.events.PatientDataResourceFilter

SIMPLE_DATE_MILLIS_FORMAT - Static variable in class com.lantanagroup.link.Helper

SIMPLE_DATE_SECONDS_FORMAT - Static variable in class com.lantanagroup.link.Helper

sort(Bundle) - Static method in class com.lantanagroup.link.FhirBundlerEntrySorter

SQLCSHelper - Class in com.lantanagroup.link.db

SQLCSHelper(Connection, String) - Constructor for class com.lantanagroup.link.db.SQLCSHelper

SQLScriptExecutor - Class in com.lantanagroup.link.db

SQLScriptExecutor() - Constructor for class com.lantanagroup.link.db.SQLScriptExecutor

SQLServerHelper - Class in com.lantanagroup.link.db

SQLServerHelper() - Constructor for class com.lantanagroup.link.db.SQLServerHelper

start(String, String) - Method in class com.lantanagroup.link.time.StopwatchManager

stop() - Method in class com.lantanagroup.link.time.Stopwatch

Stopwatch - Class in com.lantanagroup.link.time

Stopwatch(String, String) - Constructor for class com.lantanagroup.link.time.Stopwatch

StopwatchManager - Class in com.lantanagroup.link.time

StopwatchManager(SharedService) - Constructor for class com.lantanagroup.link.time.StopwatchManager

storeMetrics(String, String) - Method in class com.lantanagroup.link.time.StopwatchManager

storePatientList(TenantService, PatientList) - Method in class com.lantanagroup.link.PatientIdService

StreamUtils - Class in com.lantanagroup.link

StreamUtils() - Constructor for class com.lantanagroup.link.StreamUtils

SubjectListMeasureReportProfile - Static variable in class com.lantanagroup.link.Constants

SUBMISSION_DATE - Enum constant in enum class com.lantanagroup.link.model.TenantSummarySort

Submit - Enum constant in enum class com.lantanagroup.link.db.model.AuditTypes

Submission of report

Submitted - Enum constant in enum class com.lantanagroup.link.db.model.ReportStatuses

SubmittingDeviceProfile - Static variable in class com.lantanagroup.link.Constants

SubmittingOrganizationProfile - Static variable in class com.lantanagroup.link.Constants

SUPPLEMENTAL - Enum constant in enum class com.lantanagroup.link.query.QueryPhase

SwaggerConfig - Class in com.lantanagroup.link.config

SwaggerConfig() - Constructor for class com.lantanagroup.link.config.SwaggerConfig

T

task - Variable in class com.lantanagroup.link.time.Stopwatch

TASK_MEASURE - Static variable in class com.lantanagroup.link.Constants

TASK_PATIENT - Static variable in class com.lantanagroup.link.Constants

TASK_RETRIEVE_PATIENT_DATA - Static variable in class com.lantanagroup.link.Constants

TASK_STORE_MEASURE_REPORT - Static variable in class com.lantanagroup.link.Constants

TASK_STORE_PATIENT_DATA - Static variable in class com.lantanagroup.link.Constants

TASK_SUBMIT - Static variable in class com.lantanagroup.link.Constants

TASK_VALIDATE - Static variable in class com.lantanagroup.link.Constants

Tenant - Class in com.lantanagroup.link.db.model.tenant

Tenant() - Constructor for class com.lantanagroup.link.db.model.tenant.Tenant

TenantController - Class in com.lantanagroup.link.api.controller

TenantController() - Constructor for class com.lantanagroup.link.api.controller.TenantController

TenantService - Class in com.lantanagroup.link.db

TenantService(Tenant) - Constructor for class com.lantanagroup.link.db.TenantService

TenantSummary - Class in com.lantanagroup.link.model

TenantSummary() - Constructor for class com.lantanagroup.link.model.TenantSummary

TenantSummaryMeasure - Class in com.lantanagroup.link.model

TenantSummaryMeasure() - Constructor for class com.lantanagroup.link.model.TenantSummaryMeasure

TenantSummaryMeasure(String, String, String) - Constructor for class com.lantanagroup.link.model.TenantSummaryMeasure

TenantSummaryResponse - Class in com.lantanagroup.link.model

TenantSummaryResponse() - Constructor for class com.lantanagroup.link.model.TenantSummaryResponse

TenantSummarySort - Enum Class in com.lantanagroup.link.model

TerminologyEndpointCode - Static variable in class com.lantanagroup.link.Constants

TerminologyEndpointSystem - Static variable in class com.lantanagroup.link.Constants

test(String, String, String, String, String, String) - Method in class com.lantanagroup.link.api.controller.DataController

testConnection() - Method in class com.lantanagroup.link.db.TenantService

TestResponse - Class in com.lantanagroup.link.model

TestResponse() - Constructor for class com.lantanagroup.link.model.TestResponse

TokenAuth - Class in com.lantanagroup.link.db.model.tenant.auth

TokenAuth - Class in com.lantanagroup.link.query.auth

TokenAuth() - Constructor for class com.lantanagroup.link.db.model.tenant.auth.TokenAuth

TokenAuth() - Constructor for class com.lantanagroup.link.query.auth.TokenAuth

toModel(ResultSet) - Method in class com.lantanagroup.link.db.mappers.BaseMapper

toOnlyElement(T, T) - Static method in class com.lantanagroup.link.StreamUtils

toOperationOutcome(List<ValidationResult>) - Static method in class com.lantanagroup.link.db.mappers.ValidationResultMapper

The REST API responds with an OperationOutcome, so this method is used to convert the persisted validation results into an OperationOutcome that can be returned by the REST API.

toParameters(T) - Method in class com.lantanagroup.link.db.mappers.BaseMapper

toString() - Method in class com.lantanagroup.link.model.PatientOfInterestModel

toString(Base) - Static method in class com.lantanagroup.link.FhirHelper

toString(Base, boolean) - Static method in class com.lantanagroup.link.FhirHelper

toString(Property) - Static method in class com.lantanagroup.link.FhirHelper

toValidationResults(OperationOutcome) - Static method in class com.lantanagroup.link.db.mappers.ValidationResultMapper

transaction(Bundle) - Method in class com.lantanagroup.link.FhirDataProvider

triggerDataEvent(TenantService, EventTypes, Bundle, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.EventService

triggerEvent(TenantService, EventTypes, ReportCriteria, ReportContext) - Method in class com.lantanagroup.link.EventService

triggerEvent(TenantService, EventTypes, ReportCriteria, ReportContext, ReportContext.MeasureContext) - Method in class com.lantanagroup.link.EventService

TypedQueryPlan - Class in com.lantanagroup.link.config.query

TypedQueryPlan - Class in com.lantanagroup.link.db.model.tenant

TypedQueryPlan() - Constructor for class com.lantanagroup.link.config.query.TypedQueryPlan

TypedQueryPlan() - Constructor for class com.lantanagroup.link.db.model.tenant.TypedQueryPlan

U

updateMeasures() - Method in class com.lantanagroup.link.validation.Validator

updateResource(IBaseResource) - Method in class com.lantanagroup.link.FhirDataProvider

updateTenant(Tenant, String) - Method in class com.lantanagroup.link.api.controller.TenantController

updateUser(User, UUID) - Method in class com.lantanagroup.link.api.controller.UserController

updateUserPassword(UUID, String) - Method in class com.lantanagroup.link.api.controller.UserController

upload(String, InputStream) - Method in interface com.lantanagroup.link.IAzureBlobStorageSender

Uploads a file to an Azure container using an InputStream

User - Class in com.lantanagroup.link.db.model

User() - Constructor for class com.lantanagroup.link.db.model.User

UserController - Class in com.lantanagroup.link.api.controller

UserController() - Constructor for class com.lantanagroup.link.api.controller.UserController

UuidPrefix - Static variable in class com.lantanagroup.link.Constants

V

validate(StopwatchManager, TenantService, Report) - Method in class com.lantanagroup.link.validation.ValidationService

validate(String, String) - Method in class com.lantanagroup.link.api.controller.ValidationController

Re-validates a generated report and persists the validation results.

validate(Bundle, OperationOutcome.IssueSeverity) - Method in class com.lantanagroup.link.api.controller.ValidationController

Validates a Bundle provided in the request body

validate(Resource, OperationOutcome.IssueSeverity) - Method in class com.lantanagroup.link.validation.Validator

validateHeaderJwtToken(String) - Static method in class com.lantanagroup.link.auth.OAuth2Helper

validateSummary(Bundle, OperationOutcome.IssueSeverity) - Method in class com.lantanagroup.link.api.controller.ValidationController

Validates a Bundle provided in the request body

ValidationCategorizer - Class in com.lantanagroup.link

ValidationCategorizer() - Constructor for class com.lantanagroup.link.ValidationCategorizer

ValidationCategorizer(List<ValidationResult>) - Constructor for class com.lantanagroup.link.ValidationCategorizer

ValidationCategory - Class in com.lantanagroup.link.model

ValidationCategory() - Constructor for class com.lantanagroup.link.model.ValidationCategory

ValidationCategory(String, ValidationCategorySeverities, Boolean, ValidationCategoryTypes, String) - Constructor for class com.lantanagroup.link.model.ValidationCategory

ValidationCategoryRepository - Class in com.lantanagroup.link.db.repositories

ValidationCategoryRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.ValidationCategoryRepository

ValidationCategoryResponse - Class in com.lantanagroup.link.model

ValidationCategoryResponse() - Constructor for class com.lantanagroup.link.model.ValidationCategoryResponse

ValidationCategoryResponse(ValidationCategory) - Constructor for class com.lantanagroup.link.model.ValidationCategoryResponse

ValidationCategoryRule - Class in com.lantanagroup.link.validation

ValidationCategoryRule() - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRule

ValidationCategoryRule(ValidationCategoryRule.Field, String) - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRule

ValidationCategoryRule(ValidationCategoryRule.Field, String, boolean) - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRule

ValidationCategoryRule.Field - Enum Class in com.lantanagroup.link.validation

ValidationCategoryRuleSet - Class in com.lantanagroup.link.validation

ValidationCategoryRuleSet() - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRuleSet

ValidationCategoryRuleSet(boolean) - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRuleSet

ValidationCategoryRuleSet(boolean, List<ValidationCategoryRule>) - Constructor for class com.lantanagroup.link.validation.ValidationCategoryRuleSet

ValidationCategorySeverities - Enum Class in com.lantanagroup.link.model

ValidationCategoryTypes - Enum Class in com.lantanagroup.link.model

ValidationController - Class in com.lantanagroup.link.api.controller

ValidationController() - Constructor for class com.lantanagroup.link.api.controller.ValidationController

ValidationMetric - Class in com.lantanagroup.link.model

ValidationMetric() - Constructor for class com.lantanagroup.link.model.ValidationMetric

ValidationRepository - Class in com.lantanagroup.link.db.repositories

ValidationRepository(DataSource, PlatformTransactionManager) - Constructor for class com.lantanagroup.link.db.repositories.ValidationRepository

ValidationResult - Class in com.lantanagroup.link.db.model.tenant

ValidationResult() - Constructor for class com.lantanagroup.link.db.model.tenant.ValidationResult

ValidationResultCategory - Class in com.lantanagroup.link.db.model.tenant

ValidationResultCategory() - Constructor for class com.lantanagroup.link.db.model.tenant.ValidationResultCategory

ValidationResultCategoryMapper - Class in com.lantanagroup.link.db.mappers

ValidationResultCategoryMapper() - Constructor for class com.lantanagroup.link.db.mappers.ValidationResultCategoryMapper

ValidationResultMapper - Class in com.lantanagroup.link.db.mappers

ValidationResultMapper() - Constructor for class com.lantanagroup.link.db.mappers.ValidationResultMapper

ValidationResultMapper(String) - Constructor for class com.lantanagroup.link.db.mappers.ValidationResultMapper

ValidationService - Class in com.lantanagroup.link.validation

ValidationService() - Constructor for class com.lantanagroup.link.validation.ValidationService

validator(SharedService) - Method in class com.lantanagroup.link.api.ApiApplication

Validator - Class in com.lantanagroup.link.validation

Validator(SharedService) - Constructor for class com.lantanagroup.link.validation.Validator

validLibraries(Bundle) - Static method in class com.lantanagroup.link.FhirHelper

valueOf(String) - Static method in enum class com.lantanagroup.link.AzureBlobStorageSenderFormats

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.config.query.OperationType

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.config.sender.FileSystemSenderConfig.Formats

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.db.model.AuditTypes

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.db.model.ReportStatuses

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.db.model.tenant.OperationType

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.EventTypes

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.model.TenantSummarySort

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.model.ValidationCategorySeverities

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.model.ValidationCategoryTypes

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.query.QueryPhase

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.ReportingPeriodMethods

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

Returns the enum constant of this class with the specified name.

values() - Static method in enum class com.lantanagroup.link.AzureBlobStorageSenderFormats

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.config.query.OperationType

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.config.sender.FileSystemSenderConfig.Formats

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.db.model.AuditTypes

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.db.model.ReportStatuses

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.db.model.tenant.OperationType

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.EventTypes

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.model.TenantSummarySort

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.model.ValidationCategorySeverities

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.model.ValidationCategoryTypes

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.query.QueryPhase

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.ReportingPeriodMethods

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class com.lantanagroup.link.validation.ValidationCategoryRule.Field

Returns an array containing the constants of this enum class, in the order they are declared.

verifyToken(String, String, String, String, String) - Method in interface com.lantanagroup.link.auth.ITokenValidator

verifyToken(String, String, String, String, String) - Method in class com.lantanagroup.link.auth.OAuthTokenValidator

verifyToken(String, String, String, String, String) - Method in class com.lantanagroup.link.auth.SamsTokenValidator

W

walk(Base, Class<T>, Consumer<T>) - Static method in class com.lantanagroup.link.FhirHelper

WARNING - Enum constant in enum class com.lantanagroup.link.model.ValidationCategorySeverities

WEEKLY_PERIOD - Static variable in class com.lantanagroup.link.Constants

X

XML - Enum constant in enum class com.lantanagroup.link.AzureBlobStorageSenderFormats

XML - Enum constant in enum class com.lantanagroup.link.config.sender.FileSystemSenderConfig.Formats

Y

YamlMessageConfiguration - Class in com.lantanagroup.link.spring

YamlMessageConfiguration() - Constructor for class com.lantanagroup.link.spring.YamlMessageConfiguration

YamlMessageConverter - Class in com.lantanagroup.link.spring

YamlMessageConverter() - Constructor for class com.lantanagroup.link.spring.YamlMessageConverter

YamlPropertySourceFactory - Class in com.lantanagroup.link.config

YamlPropertySourceFactory() - Constructor for class com.lantanagroup.link.config.YamlPropertySourceFactory

YEARLY_PERIOD - Static variable in class com.lantanagroup.link.Constants

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